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Nucleosome structural studies.
Curr Opin Struct Biol. 2011 Feb;21(1):128-36. doi: 10.1016/j.sbi.2010.11.006. Epub 2010 Dec 19.
2
Nucleosome positioning in relation to nucleosome spacing and DNA sequence-specific binding of a protein.
FEBS J. 2007 May;274(9):2396-410. doi: 10.1111/j.1742-4658.2007.05775.x. Epub 2007 Apr 5.
3
Structure and dynamics of a nucleosome core particle based on Widom 603 DNA sequence.
Structure. 2025 May 1;33(5):948-959.e5. doi: 10.1016/j.str.2025.02.007. Epub 2025 Mar 17.
4
Structure of RCC1 chromatin factor bound to the nucleosome core particle.
Nature. 2010 Sep 30;467(7315):562-6. doi: 10.1038/nature09321. Epub 2010 Aug 25.
5
Nucleosomal anatomy--where are the histones?
Bioessays. 1995 Feb;17(2):161-70. doi: 10.1002/bies.950170211.
6
Crystal structures of nucleosome core particles containing the '601' strong positioning sequence.
J Mol Biol. 2010 Oct 15;403(1):1-10. doi: 10.1016/j.jmb.2010.08.039. Epub 2010 Aug 26.
7
Structural diversity of the nucleosome.
J Biochem. 2018 Feb 1;163(2):85-95. doi: 10.1093/jb/mvx081.
8
A structural perspective on the where, how, why, and what of nucleosome positioning.
J Biomol Struct Dyn. 2010 Jun;27(6):803-20. doi: 10.1080/07391102.2010.10508585.
9
Nucleosome positioning and composition modulate in silico chromatin flexibility.
J Phys Condens Matter. 2015 Feb 18;27(6):064112. doi: 10.1088/0953-8984/27/6/064112. Epub 2015 Jan 7.
10
Structure-based analysis of DNA sequence patterns guiding nucleosome positioning in vitro.
J Biomol Struct Dyn. 2010 Jun;27(6):821-41. doi: 10.1080/073911010010524947.

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Molecular Mechanisms of Gain-of-Function Mutations in λ Cro Revealed by Molecular Dynamics Simulations.
bioRxiv. 2025 Aug 19:2025.08.14.670369. doi: 10.1101/2025.08.14.670369.
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Deciphering the Molecular Mechanisms of BPTF Interactions with Nucleosomes via Molecular Simulations.
bioRxiv. 2025 Jun 14:2025.02.25.640153. doi: 10.1101/2025.02.25.640153.
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Atomistic Insights Into Interaction of Doxorubicin With DNA: From Duplex to Nucleosome.
J Comput Chem. 2025 Jan 30;46(3):e70035. doi: 10.1002/jcc.70035.
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Roles of Histone H2B, H3 and H4 Variants in Cancer Development and Prognosis.
Int J Mol Sci. 2024 Sep 7;25(17):9699. doi: 10.3390/ijms25179699.
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The Role of Epigenetic Factors in the Pathogenesis of Psoriasis.
Int J Mol Sci. 2024 Mar 29;25(7):3831. doi: 10.3390/ijms25073831.
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Are extraordinary nucleosome structures more ordinary than we thought?
Chromosoma. 2023 Sep;132(3):139-152. doi: 10.1007/s00412-023-00791-w. Epub 2023 Mar 14.
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Biophysics is reshaping our perception of the epigenome: from DNA-level to high-throughput studies.
Biophys Rep (N Y). 2021 Sep 29;1(2):100028. doi: 10.1016/j.bpr.2021.100028. eCollection 2021 Dec 8.

本文引用的文献

1
Crystal structures of nucleosome core particles containing the '601' strong positioning sequence.
J Mol Biol. 2010 Oct 15;403(1):1-10. doi: 10.1016/j.jmb.2010.08.039. Epub 2010 Aug 26.
2
Structure of RCC1 chromatin factor bound to the nucleosome core particle.
Nature. 2010 Sep 30;467(7315):562-6. doi: 10.1038/nature09321. Epub 2010 Aug 25.
3
Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T.
Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10454-9. doi: 10.1073/pnas.1003064107. Epub 2010 May 24.
4
Perturbations in nucleosome structure from heavy metal association.
Nucleic Acids Res. 2010 Oct;38(18):6301-11. doi: 10.1093/nar/gkq420. Epub 2010 May 21.
5
Epigenetics in metal carcinogenesis: nickel, arsenic, chromium and cadmium.
Metallomics. 2009;1(3):222-8. doi: 10.1039/b903049b.
6
Chromatin higher-order structure and dynamics.
Cold Spring Harb Perspect Biol. 2010 May;2(5):a000596. doi: 10.1101/cshperspect.a000596. Epub 2010 Apr 7.
7
Structural insight into the sequence dependence of nucleosome positioning.
Structure. 2010 Mar 14;18(4):528-36. doi: 10.1016/j.str.2010.01.015.
8
Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome.
J Mol Biol. 2010 May 21;398(5):633-40. doi: 10.1016/j.jmb.2010.03.038. Epub 2010 Mar 27.
9
RCC1 uses a conformationally diverse loop region to interact with the nucleosome: a model for the RCC1-nucleosome complex.
J Mol Biol. 2010 May 14;398(4):518-29. doi: 10.1016/j.jmb.2010.03.037. Epub 2010 Mar 27.
10
Structural characterization of H3K56Q nucleosomes and nucleosomal arrays.
Biochim Biophys Acta. 2010 May-Jun;1799(5-6):480-6. doi: 10.1016/j.bbagrm.2010.01.009. Epub 2010 Jan 25.

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