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检测沿海巨型蝾螈(Dicamptodon tenebrosus)外周种群和核心种群遗传变异的新微卫星标记。

New microsatellite markers for examining genetic variation in peripheral and core populations of the Coastal Giant Salamander (Dicamptodon tenebrosus).

机构信息

Department of Forest Sciences, University of British Columbia, Vancouver, Canada.

出版信息

PLoS One. 2010 Dec 15;5(12):e14333. doi: 10.1371/journal.pone.0014333.

DOI:10.1371/journal.pone.0014333
PMID:21179519
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3002275/
Abstract

The Coastal Giant Salamander (Dicamptodon tenebrosus) is classified as threatened at the northern periphery of its range in British Columbia (BC), Canada, primarily due to forestry practices and habitat fragmentation. Characterising dispersal behaviour and population connectivity is therefore a priority for this region, while genetic differentiation in core versus peripheral locations remains unstudied in this wide-ranging species. We present seven new polymorphic microsatellite markers for use in population genetic analyses of D. tenebrosus. We examine locus characteristics and genetic variation in 12 streams at the species' northern range limit in BC, and within two regions representing sub-peripheral (North Cascades) and core localities (South Cascades) in Washington State, United States. In BC, the number of alleles per locus ranged from 2-5 and observed heterozygosity ranged from 0.044-0.825. Genetic differentiation was highest between BC and the South Cascades, and intermediate between BC and the North Cascades. Across loci, mean allelic richness was similar across regions, while private allelic richness was highest in the core locality (corrected for sample size). These new microsatellite loci will be a valuable addition to existing markers for detailed landscape and population genetic analyses of D. tenebrosus across its range.

摘要

沿海巨型蝾螈(Dicamptodon tenebrosus)在加拿大不列颠哥伦比亚省(BC)的分布范围北部边缘被列为受威胁物种,主要原因是林业活动和栖息地破碎化。因此,该地区优先考虑描述扩散行为和种群连通性,而在这个广泛分布的物种中,核心和边缘地区的遗传分化仍未得到研究。我们为 Dicamptodon tenebrosus 的种群遗传分析提供了七个新的多态性微卫星标记。我们研究了在 BC 北部范围极限的 12 条溪流中的位点特征和遗传变异,并在代表亚边缘(北喀斯喀特山脉)和核心地区(南喀斯喀特山脉)的两个地区内进行了研究。在 BC 省,每个位点的等位基因数范围为 2-5,观察到的杂合度范围为 0.044-0.825。BC 省与南喀斯喀特山脉之间的遗传分化最高,而与北喀斯喀特山脉之间的遗传分化居中。在整个位点上,平均等位基因丰富度在各个地区相似,而核心地区的特有等位基因丰富度最高(校正了样本量)。这些新的微卫星标记将是现有标记的有价值补充,可用于对 Dicamptodon tenebrosus 进行详细的景观和种群遗传分析。

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