Kern Melanie, Simon Jörg
Institute of Microbiology and Genetics, Department of Biology, Technische Universität Darmstadt, Darmstadt, Germany.
Methods Enzymol. 2011;486:429-46. doi: 10.1016/B978-0-12-381294-0.00019-5.
Respiratory nitrogen cycle processes like nitrification, nitrate reduction, denitrification, nitrite ammonification, or anammox involve a variety of dissimilatory enzymes and redox-active cofactors. In this context, an intriguing protein class are cytochromes c, that is, enzymes containing one or more covalently bound heme groups that are attached to heme c binding motifs (HBMs) of apo-cytochromes. The key enzyme of the corresponding maturation process is cytochrome c heme lyase (CCHL), an enzyme that catalyzes the formation of two thioether linkages between two vinyl side chains of a heme and two cysteine residues arranged in the HBM. In recent years, many multiheme cytochromes c involved in nitrogen cycle processes, such as hydroxylamine oxidoreductase and cytochrome c nitrite reductase, have attracted particular interest. Structurally, these enzymes exhibit conserved heme packing motifs despite displaying very different enzymic properties and largely unrelated primary structures. The functional and structural characterization of cytochromes c demands their purification in sufficient amounts as well as the feasibility to generate site-directed enzyme variants. For many interesting organisms, however, such systems are not available, mainly hampered by genetic inaccessibility, slow growth rates, insufficient cell yields, and/or a low capacity of cytochrome c formation. Efficient heterologous cytochrome c overproduction systems have been established using the unrelated proteobacterial species Escherichia coli and Wolinella succinogenes. In contrast to E. coli, W. succinogenes uses the cytochrome c biogenesis system II and contains a unique set of three specific CCHL isoenzymes that belong to the unusual CcsBA-type. Here, W. succinogenes is presented as host for cytochrome c overproduction focusing on a recently established gene expression system designed for large-scale production of multiheme cytochromes c.
呼吸氮循环过程,如硝化作用、硝酸盐还原、反硝化作用、亚硝酸盐氨化作用或厌氧氨氧化作用,涉及多种异化酶和氧化还原活性辅因子。在这种情况下,一类有趣的蛋白质是细胞色素c,即含有一个或多个与脱辅基细胞色素的血红素c结合基序(HBMs)共价结合的血红素基团的酶。相应成熟过程的关键酶是细胞色素c血红素裂合酶(CCHL),该酶催化血红素的两个乙烯基侧链与HBM中排列的两个半胱氨酸残基之间形成两个硫醚键。近年来,许多参与氮循环过程的多血红素细胞色素c,如羟胺氧化还原酶和细胞色素c亚硝酸盐还原酶,引起了特别关注。在结构上,尽管这些酶表现出非常不同的酶学性质和基本不相关的一级结构,但它们呈现出保守的血红素堆积基序。细胞色素c的功能和结构表征需要足够量的纯化以及产生定点酶变体的可行性。然而,对于许多有趣的生物体来说,这样的系统并不存在,主要受到遗传不可及性、生长速度缓慢、细胞产量不足和/或细胞色素c形成能力低的阻碍。已经使用不相关的变形菌属物种大肠杆菌和琥珀酸沃林氏菌建立了高效的异源细胞色素c过量生产系统。与大肠杆菌不同,琥珀酸沃林氏菌使用细胞色素c生物合成系统II,并包含一组独特的三种特定的CCHL同工酶,它们属于不寻常的CcsBA类型。在此,将琥珀酸沃林氏菌作为细胞色素c过量生产的宿主,重点介绍最近建立的用于大规模生产多血红素细胞色素c的基因表达系统。