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使用线性化弹性自由能模型探索双层膜上曲率诱导蛋白的有限温度平衡行为景观。

Landscape of finite-temperature equilibrium behaviour of curvature-inducing proteins on a bilayer membrane explored using a linearized elastic free energy model.

作者信息

Agrawal Neeraj J, Weinstein Joshua, Radhakrishnan Ravi

机构信息

Department of Chemical and Biomolecular Engineering, Philadelphia, PA 19104, USA.

出版信息

Mol Phys. 2008 Aug 1;106(15):1913-1923. doi: 10.1080/00268970802365990.

DOI:10.1080/00268970802365990
PMID:21243078
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3020790/
Abstract

Using a recently developed multiscale simulation methodology, we describe the equilibrium behaviour of bilayer membranes under the influence of curvature-inducing proteins using a linearized elastic free energy model. In particular, we describe how the cooperativity associated with a multitude of protein-membrane interactions and protein diffusion on a membrane-mediated energy landscape elicits emergent behaviour in the membrane phase. Based on our model simulations, we predict that, depending on the density of membrane-bound proteins and the degree to which a single protein molecule can induce intrinsic mean curvature in the membrane, a range of membrane phase behaviour can be observed including two different modes of vesicle-bud nucleation and repressed membrane undulations. A state diagram as a function of experimentally tunable parameters to classify the underlying states is proposed.

摘要

使用最近开发的多尺度模拟方法,我们利用线性化弹性自由能模型描述了在曲率诱导蛋白影响下双层膜的平衡行为。特别是,我们描述了与众多蛋白质-膜相互作用以及膜介导能量景观上的蛋白质扩散相关的协同作用如何在膜相中引发涌现行为。基于我们的模型模拟,我们预测,根据膜结合蛋白的密度以及单个蛋白质分子能够在膜中诱导固有平均曲率的程度,可以观察到一系列膜相行为,包括两种不同的囊泡芽核化模式和抑制的膜波动。我们提出了一个作为实验可调参数函数的状态图,以对潜在状态进行分类。

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本文引用的文献

1
'KMC-TDGL'-a coarse-grained methodology for simulating interfacial dynamics in complex fluids: application to protein-mediated membrane processes.“KMC-TDGL”——一种用于模拟复杂流体中界面动力学的粗粒度方法:应用于蛋白质介导的膜过程。
Mol Phys. 2006;104(22-24):3653-3666. doi: 10.1080/00268970600997580.
2
Diffusion on ruffled membrane surfaces.在褶皱膜表面的扩散。
J Chem Phys. 2007 Jun 21;126(23):235103. doi: 10.1063/1.2739526.
3
Aggregation and vesiculation of membrane proteins by curvature-mediated interactions.通过曲率介导的相互作用实现膜蛋白的聚集和囊泡化。
Nature. 2007 May 24;447(7143):461-4. doi: 10.1038/nature05840.
4
Biophysics: bending over to attract.生物物理学:俯身以吸引。
Nature. 2007 May 24;447(7143):387-9. doi: 10.1038/447387a.
5
Intermonolayer friction and surface shear viscosity of lipid bilayer membranes.脂质双层膜的层间摩擦力和表面剪切粘度。
Biophys J. 2007 Jul 15;93(2):423-33. doi: 10.1529/biophysj.107.105395. Epub 2007 Apr 27.
6
Bending mechanics and molecular organization in biological membranes.生物膜中的弯曲力学与分子组织
Annu Rev Phys Chem. 2007;58:697-717. doi: 10.1146/annurev.physchem.56.092503.141216.
7
Shape transitions in lipid membranes and protein mediated vesicle fusion and fission.脂质膜中的形状转变以及蛋白质介导的囊泡融合与裂变。
J Chem Phys. 2007 Mar 7;126(9):095102. doi: 10.1063/1.2483862.
8
Hybrid simulations of lateral diffusion in fluctuating membranes.波动膜中横向扩散的混合模拟
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9
Simulations of the dynamics of thermal undulations in lipid bilayers in the tensionless state and under stress.无张力状态和有应力状态下脂质双层中热涨落动力学的模拟。
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Dynamics in the plasma membrane: how to combine fluidity and order.质膜中的动力学:如何将流动性与有序性相结合。
EMBO J. 2006 Aug 9;25(15):3446-57. doi: 10.1038/sj.emboj.7601204. Epub 2006 Jun 22.