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是什么促使淀粉样蛋白分子组装成寡聚物和原纤维?

What drives amyloid molecules to assemble into oligomers and fibrils?

机构信息

Department of Pharmaceutical Chemistry, University of California, San Francisco, USA.

出版信息

Biophys J. 2011 Jan 19;100(2):450-8. doi: 10.1016/j.bpj.2010.11.041.

Abstract

We develop a theory for three states of equilibrium of amyloid peptides: the monomer, oligomer, and fibril. We assume that the oligomeric state is a disordered micellelike collection of a few peptide chains held together loosely by hydrophobic interactions into a spherical hydrophobic core. We assume that fibrillar amyloid chains are aligned and further stabilized by steric zipper interactions-hydrogen bonding, steric packing, and specific hydrophobic side-chain contacts. The model makes a broad set of predictions that are consistent with experimental results: 1), Similar to surfactant micellization, amyloid oligomerization should increase with peptide concentration in solution. 2), The onset of fibrillization limits the concentration of oligomers in the solution. 3), The extent of Aβ fibrillization increases with peptide concentration. 4), The predicted average fibril length versus monomer concentration agrees with data on α-synuclein. 5), Full fibril length distributions agree with data on α-synuclein. 6), Denaturants should melt out fibrils. And finally, 7), added salt should stabilize fibrils by reducing repulsions between amyloid peptide chains. It is of interest that small changes in solvent conditions can tip the equilibrium balance between oligomer and fibril and cause large changes in rates through effects on the transition-state barrier. This model may provide useful insights into the physical processes underlying amyloid diseases.

摘要

我们提出了一个关于淀粉样肽三种平衡态的理论

单体、低聚物和纤维。我们假设低聚物态是由几条肽链通过疏水力松散地结合在一起形成的无序胶束样集合体,形成一个疏水性核心。我们假设纤维状的淀粉样肽链通过位阻拉链相互作用(氢键、空间位阻堆积和特定的疏水性侧链接触)排列并进一步稳定。该模型做出了一系列广泛的预测,这些预测与实验结果一致:1)类似于表面活性剂胶束化,淀粉样低聚物的聚合度应该随着溶液中肽浓度的增加而增加。2)纤维形成的开始限制了溶液中低聚物的浓度。3)β-淀粉样肽纤维的形成程度随肽浓度的增加而增加。4)预测的平均纤维长度与单体浓度与α-突触核蛋白的数据一致。5)完整的纤维长度分布与α-突触核蛋白的数据一致。6)变性剂应该通过消除淀粉样肽链之间的斥力而使纤维融化。最后,7)添加盐可以通过减少淀粉样肽链之间的斥力来稳定纤维。有趣的是,溶剂条件的微小变化可以使寡聚体和纤维之间的平衡平衡发生倾斜,并通过对过渡态势垒的影响导致速率发生很大变化。该模型可能为淀粉样疾病的物理过程提供有用的见解。

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本文引用的文献

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Nucleation of amyloid fibrils.淀粉样纤维的成核。
J Chem Phys. 2010 Jun 7;132(21):215101. doi: 10.1063/1.3447891.
3
Self-assembly of protein amyloids: a competition between amorphous and ordered aggregation.蛋白质淀粉样蛋白的自组装:无定形聚集与有序聚集之间的竞争。
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Sep;80(3 Pt 1):031922. doi: 10.1103/PhysRevE.80.031922. Epub 2009 Sep 30.
4
Computing protein stabilities from their chain lengths.根据蛋白质的链长计算其稳定性。
Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10649-54. doi: 10.1073/pnas.0903995106. Epub 2009 Jun 17.
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Theory for protein folding cooperativity: helix bundles.蛋白质折叠协同性理论:螺旋束
J Am Chem Soc. 2009 Feb 18;131(6):2306-12. doi: 10.1021/ja808136x.
9
Structural classification of toxic amyloid oligomers.毒性淀粉样寡聚体的结构分类
J Biol Chem. 2008 Oct 31;283(44):29639-43. doi: 10.1074/jbc.R800016200. Epub 2008 Aug 22.

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