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利用 SNP 芯片进行纯合子作图证实 3p21 是灰色血小板综合征的隐性位点,并显著缩小了该区间。

Homozygosity mapping with SNP arrays confirms 3p21 as a recessive locus for gray platelet syndrome and narrows the interval significantly.

机构信息

Department of Pediatrics and Genetics, University of Colorado, Denver, CO, USA.

出版信息

Blood. 2011 Mar 24;117(12):3430-4. doi: 10.1182/blood-2010-12-322990. Epub 2011 Jan 24.

DOI:10.1182/blood-2010-12-322990
PMID:21263149
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3069679/
Abstract

Gray platelet syndrome (GPS) is an inherited bleeding disorder characterized by thrombocytopenia and the absence of α-granules in platelets. Patients with GPS present with mild to moderate bleeding and many develop myelofibrosis. The genetic cause of GPS is unknown. We present 2 Native American families with a total of 5 affected persons and a single affected patient of Pakistani origin in which GPS appears to be inherited in an autosomal recessive manner. Homozygosity mapping using the Affymetrix 6.0 chips demonstrates that all 6 GPS-affected persons studied are homozygous for a 1.7-Mb region in 3p21. Linkage analysis confirmed the region with a logarithm of the odds score of 2.7. Data from our families enabled us to significantly decrease the size of the critical region for GPS from the previously reported 9.4-Mb region at 3p21.

摘要

格雷血小板综合征 (GPS) 是一种遗传性出血性疾病,其特征为血小板减少症和血小板中缺乏α-颗粒。GPS 患者表现为轻度至中度出血,许多患者发展为骨髓纤维化。GPS 的遗传原因尚不清楚。我们介绍了 2 个具有血缘关系的美籍印第安人家族,共 5 名受影响者和 1 名来自巴基斯坦的单一受影响者,GPS 似乎以常染色体隐性方式遗传。使用 Affymetrix 6.0 芯片进行的纯合子作图表明,研究的所有 6 名 GPS 受影响者均为 3p21 中 1.7Mb 区域的纯合子。连锁分析证实该区域的对数优势得分为 2.7。来自我们家族的资料使我们能够将 GPS 的关键区域从先前报道的 3p21 处的 9.4Mb 区域显著缩小。

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本文引用的文献

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Whole exome sequencing and homozygosity mapping identify mutation in the cell polarity protein GPSM2 as the cause of nonsyndromic hearing loss DFNB82.全外显子测序和纯合子作图确定细胞极性蛋白 GPSM2 中的突变是常染色体隐性遗传性耳聋 DFNB82 的致病原因。
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Direct selection of human genomic loci by microarray hybridization.通过微阵列杂交直接选择人类基因组位点。
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