Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560012, India.
Protein Eng Des Sel. 2011 May;24(5):463-72. doi: 10.1093/protein/gzr005. Epub 2011 Feb 2.
The role of inter-subunit interactions in maintaining optimal catalytic activity in triosephosphate isomerase (TIM) has been probed, using the Plasmodium falciparum enzyme as a model. Examination of subunit interface contacts in the crystal structures suggests that residue 75 (Thr, conserved) and residue 13 (Cys, variable) make the largest number of inter-subunit contacts. The mutants Cys13Asp (C13D) and Cys13Glu (C13E) have been constructed and display significant reduction in catalytic activity when compared with wild-type (WT) enzyme (∼ 7.4-fold decrease in k(cat) for the C13D and ∼ 3.3-fold for the C13E mutants). Analytical gel filtration demonstrates that the C13D mutant dissociates at concentrations <1.25 μM, whereas the WT and the C13E enzymes retain the dimeric structure. The order of stability of the mutants in the presence of chemical denaturants, like urea and guanidium chloride, is WT > Cys13Glu > Cys13Asp. Irreversible thermal precipitation temperatures follow the same order as well. Modeling studies establish that the Cys13Asp mutation is likely to cause a significantly greater structural perturbation than Cys13Glu. Analysis of sequence and structural data for TIMs from diverse sources suggests that residues 13 and 82 form a pair of proximal sites, in which a limited number of residue pairs may be accommodated.
本研究以恶性疟原虫三磷酸甘油醛异构酶(TIM)为模型,探讨亚基间相互作用在维持最佳催化活性中的作用。晶体结构中亚基界面接触的分析表明,残基 75(Thr,保守)和残基 13(Cys,可变)形成了数量最多的亚基间接触。构建了 Cys13Asp(C13D)和 Cys13Glu(C13E)突变体,与野生型(WT)酶相比,它们的催化活性显著降低(C13D 突变体的 kcat 降低约 7.4 倍,C13E 突变体降低约 3.3 倍)。分析性凝胶过滤表明,C13D 突变体在浓度<1.25 μM 时解离,而 WT 和 C13E 酶保留二聚体结构。在化学变性剂(如尿素和盐酸胍)存在下,突变体的稳定性顺序为 WT>Cys13Glu>Cys13Asp。不可逆热沉淀温度也遵循相同的顺序。建模研究表明,Cys13Asp 突变可能导致比 Cys13Glu 更大的结构扰动。对来自不同来源的 TIMs 的序列和结构数据的分析表明,残基 13 和 82 形成一对邻近的位点,其中可能容纳有限数量的残基对。