Chemical Biology Graduate Program, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4M1, Canada.
Biochemistry. 2011 Mar 29;50(12):2205-12. doi: 10.1021/bi1017842. Epub 2011 Feb 18.
MurAs (enolpyruvyl-UDP-GlcNAc synthases) from pathogenic bacteria such as Borrelia burgdorferi (Lyme disease) and tuberculosis are fosfomycin resistant because an Asp-for-Cys substitution prevents them from being alkylated by this epoxide antibiotic. Previous attempts to characterize naturally Asp-containing MurAs have resulted in no protein or no activity. We have expressed and characterized His-tagged Lyme disease MurA (Bb_MurA(H6)). The protein was most soluble at high salt concentrations but maximally active around physiological ionic strength. The steady-state kinetic parameters at pH 7 were k(cat) = 1.07 ± 0.03 s(-1), K(M,PEP) = 89 ± 12 μM, and K(M,UDP-GlcNAc) = 45 ± 7 μM. Mutating the active site Asp to Cys, D116C, caused a 21-fold decrease in k(cat) and rendered the enzyme fosfomycin sensitive. The pH profile of k(cat) was bell-shaped and centered around pH 5.3 for Bb_MurA(H6), with pK(a1) = 3.8 ± 0.2 and pK(a2) = 7.4 ± 0.2. There was little change in pK(a1) with the D116C mutant, 3.5 ± 0.3, but pK(a2) shifted to >11. This demonstrated that the pK(a2) of 7.4 was due to D116, almost 3 pH units above an unperturbed carboxylate, and that it must be protonated for activity. This supports D116's proposed role as a general acid/base catalyst. As fosfomycin does not react with simple thiols, nor most protein thiols, the reactivity of D116C with fosfomycin, combined with the strongly perturbed pK(a2) for D116, strongly implies an unusual active site environment and a chemical role in catalysis for Asp/Cys. There is also good evidence for C115 having a role in product release. Both roles may be operative for both Asp- and Cys-containing MurAs.
致病细菌(如伯氏疏螺旋体(莱姆病)和结核分枝杆菌)中的 MurAs(烯醇丙酮酸-UDP-N-乙酰葡萄糖胺合酶)对磷霉素具有抗性,因为天冬氨酸到半胱氨酸的取代阻止了它们被这种环氧化物抗生素烷化。以前尝试表征天然含有天冬氨酸的 MurAs 导致没有蛋白质或没有活性。我们已经表达和表征了带有 His 标签的莱姆病 MurA(Bb_MurA(H6))。该蛋白质在高盐浓度下最具可溶性,但在生理离子强度下活性最大。在 pH 7 时的稳态动力学参数为 k(cat) = 1.07 ± 0.03 s(-1),K(M,PEP) = 89 ± 12 μM,K(M,UDP-GlcNAc) = 45 ± 7 μM。将活性位点天冬氨酸突变为半胱氨酸 D116C 导致 k(cat) 降低 21 倍,使酶对磷霉素敏感。k(cat) 的 pH 曲线呈钟形,以 pH 5.3 为中心,Bb_MurA(H6) 的 pK(a1) = 3.8 ± 0.2,pK(a2) = 7.4 ± 0.2。D116C 突变体的 pK(a1) 几乎没有变化,为 3.5 ± 0.3,但 pK(a2) 移至>11。这表明 7.4 的 pK(a2) 归因于 D116,几乎比未受干扰的羧酸高出 3 个 pH 单位,并且它必须质子化才能具有活性。这支持了 D116 作为通用酸碱催化剂的作用。由于磷霉素不与简单的硫醇反应,也不与大多数蛋白质硫醇反应,因此 D116C 与磷霉素的反应,再加上 D116 的 pK(a2) 受到强烈干扰,强烈暗示了一个不寻常的活性位点环境和在催化中起作用的化学作用。对于 C115 在产物释放中的作用也有很好的证据。这两个角色可能都适用于含有天冬氨酸和半胱氨酸的 MurAs。