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白细胞计数影响犬全血样本中参考基因的表达。

Leukocyte count affects expression of reference genes in canine whole blood samples.

作者信息

Piek Christine J, Brinkhof Bas, Rothuizen Jan, Dekker Aldo, Penning Louis C

机构信息

Department of Clinical Sciences of Companion Animals, Utrecht, Utrecht University, PO Box 80154, 3508 TD Utrecht, The Netherlands.

出版信息

BMC Res Notes. 2011 Feb 9;4:36. doi: 10.1186/1756-0500-4-36.

Abstract

BACKGROUND

The dog is frequently used as a model for hematologic human diseases. In this study the suitability of nine potential reference genes for quantitative RT-PCR studies in canine whole blood was investigated.

FINDINGS

The expression of these genes was measured in whole blood samples of 263 individual dogs, representing 73 different breeds and a group of 40 mixed breed dogs, categorized into healthy dogs and dogs with internal and hematological diseases, and dogs that underwent a surgical procedure. GeNorm analysis revealed that a combination of 5 to 6 of the most stably expressed genes constituted a stable normalizing factor. Evaluation of the expression revealed different ranking of reference genes in Normfinder and GeNorm. The disease category and the white blood cell count significantly affected reference gene expression.

CONCLUSIONS

The discrepancy between the ranking of reference genes in this study by Normfinder and Genorm can be explained by differences between the experimental groups such as "disease category" and "WBC count". This stresses the importance of assessing the expression stability of potential reference genes for gene experiments in canine whole blood anew for each specific experimental condition.

摘要

背景

狗常被用作人类血液疾病的模型。在本研究中,对九个潜在的管家基因在犬全血定量RT-PCR研究中的适用性进行了调查。

研究结果

在263只个体犬的全血样本中测量了这些基因的表达,这些犬代表73个不同品种以及一组40只混种犬,分为健康犬、患有内科和血液疾病的犬以及接受过外科手术的犬。GeNorm分析表明,由5至6个表达最稳定的基因组成的组合构成了一个稳定的标准化因子。对表达的评估显示,管家基因在Normfinder和GeNorm中的排名不同。疾病类别和白细胞计数显著影响管家基因的表达。

结论

本研究中Normfinder和Genorm对管家基因排名的差异可以通过“疾病类别”和“白细胞计数”等实验组之间的差异来解释。这强调了针对每个特定实验条件,重新评估犬全血基因实验中潜在管家基因表达稳定性的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f40/3045956/0d19040561a4/1756-0500-4-36-1.jpg

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