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基因组标准协会(GSC)第6次和第7次研讨会会议报告。

Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7.

作者信息

Field Dawn, Sterk Peter, Kyrpides Nikos, Kottmann Renzo, Glöckner Frank Oliver, Hirschman Lynette, Garrity George M, Wooley John, Gilna Paul

出版信息

Stand Genomic Sci. 2009 Jul 20;1(1):68-71. doi: 10.4056/sigs.25165.

Abstract

This report summarizes the proceedings of the 6th and 7th workshops of the Genomic Standards Consortium (GSC), held back-to-back in 2008. GSC 6 focused on furthering the activities of GSC working groups, GSC 7 focused on outreach to the wider community. GSC 6 was held October 10-14, 2008 at the European Bioinformatics Institute, Cambridge, United Kingdom and included a two-day workshop focused on the refinement of the Genomic Contextual Data Markup Language (GCDML). GSC 7 was held as the opening day of the International Congress on Metagenomics 2008 in San Diego California. Major achievements of these combined meetings included an agreement from the International Nucleotide Sequence Database Consortium (INSDC) to create a "MIGS" keyword for capturing "Minimum Information about a Genome Sequence" compliant information within INSDC (DDBJ/EMBL /Genbank) records, launch of GCDML 1.0, MIGS compliance of the first set of "Genomic Encyclopedia of Bacteria and Archaea" project genomes, approval of a proposal to extend MIGS to 16S rRNA sequences within a "Minimum Information about an Environmental Sequence", finalization of plans for the GSC eJournal, "Standards in Genomic Sciences" (SIGS), and the formation of a GSC Board. Subsequently, the GSC has been awarded a Research Co-ordination Network (RCN4GSC) grant from the National Science Foundation, held the first SIGS workshop and launched the journal. The GSC will also be hosting outreach workshops at both ISMB 2009 and PSB 2010 focused on "Metagenomics, Metadata and MetaAnalysis" (M(3)). Further information about the GSC and its range of activities can be found at http://gensc.org, including videos of all the presentations at GSC 7.

摘要

本报告总结了基因组标准协会(GSC)于2008年相继举办的第六届和第七届研讨会的会议进程。第六届GSC研讨会着重推进GSC各工作组的活动,第七届则侧重于向更广泛的群体进行推广。第六届GSC研讨会于2008年10月10日至14日在英国剑桥的欧洲生物信息学研究所举行,其中包括一个为期两天、专注于完善基因组上下文数据标记语言(GCDML)的研讨会。第七届GSC研讨会作为2008年在加利福尼亚州圣地亚哥举行的国际宏基因组学大会的开幕日。这些联合会议的主要成果包括:国际核苷酸序列数据库联盟(INSDC)同意创建一个“MIGS”关键词,用于在INSDC(DDBJ/EMBL/Genbank)记录中捕获符合“关于基因组序列的最小信息”的信息;发布GCDML 1.0;第一组“细菌和古菌基因组百科全书”项目基因组符合MIGS标准;批准一项将MIGS扩展到“关于环境序列的最小信息”中的16S rRNA序列的提案;敲定GSC电子期刊《基因组科学标准》(SIGS)的计划;以及成立GSC理事会。随后,GSC获得了美国国家科学基金会授予的研究协调网络(RCN4GSC)资助,举办了首届SIGS研讨会并推出了该期刊。GSC还将在2009年的国际智能分子生物学大会(ISMB)和2010年的太平洋生物科学会议(PSB)上举办以“宏基因组学、元数据和元分析”(M(3))为主题的推广研讨会。有关GSC及其一系列活动的更多信息可在http://gensc.org上查询,包括第七届GSC研讨会所有报告的视频。

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