Suppr超能文献

短螺旋体murdochii模式菌株(56-150)的全基因组序列

Complete genome sequence of Brachyspira murdochii type strain (56-150).

作者信息

Pati Amrita, Sikorski Johannes, Gronow Sabine, Munk Christine, Lapidus Alla, Copeland Alex, Glavina Del Tio Tijana, Nolan Matt, Lucas Susan, Chen Feng, Tice Hope, Cheng Jan-Fang, Han Cliff, Detter John C, Bruce David, Tapia Roxanne, Goodwin Lynne, Pitluck Sam, Liolios Konstantinos, Ivanova Natalia, Mavromatis Konstantinos, Mikhailova Natalia, Chen Amy, Palaniappan Krishna, Land Miriam, Hauser Loren, Chang Yun-Juan, Jeffries Cynthia D, Spring Stefan, Rohde Manfred, Göker Markus, Bristow James, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter

出版信息

Stand Genomic Sci. 2010 Jun 15;2(3):260-9. doi: 10.4056/sigs.831993.

Abstract

Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the 'group B spirochaetes' were first described as Serpulina murdochii. Members of the family Brachyspiraceae are of great phylogenetic interest because of the extremely isolated location of this family within the phylum 'Spirochaetes'. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a type strain of a member of the family Brachyspiraceae and only the second genome sequence from a member of the genus Brachyspira. The 3,241,804 bp long genome with its 2,893 protein-coding and 40 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

默多克短螺旋体(Brachyspira murdochii)由斯坦顿等人于1992年发现,是短螺旋体科的一种非致病性、与宿主相关的螺旋体。最初从一头健康猪的肠道内容物中分离出来,“B组螺旋体”最初被描述为默多克蛇形螺旋体(Serpulina murdochii)。短螺旋体科的成员具有极大的系统发育研究价值,因为该科在螺旋体门中处于极为孤立的位置。在此,我们描述了这种微生物的特征,以及其完整的基因组序列和注释。这是短螺旋体科成员模式菌株的首个完整基因组序列,也是短螺旋体属成员的第二个基因组序列。这个长度为3,241,804 bp的基因组,包含2,893个蛋白质编码基因和40个RNA基因,是细菌和古菌基因组百科全书项目的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b67/3035287/fe3c3966e06e/sigs.831993-f1.jpg

相似文献

1
Complete genome sequence of Brachyspira murdochii type strain (56-150).
Stand Genomic Sci. 2010 Jun 15;2(3):260-9. doi: 10.4056/sigs.831993.
3
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).
Stand Genomic Sci. 2010 Jun 15;2(3):280-9. doi: 10.4056/sigs.902116.
4
Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1).
Stand Genomic Sci. 2011 Feb 20;4(1):54-62. doi: 10.4056/sigs.1523807.
5
Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).
Stand Genomic Sci. 2009 Nov 22;1(3):254-61. doi: 10.4056/sigs.40645.
6
Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139).
Stand Genomic Sci. 2011 Apr 29;4(2):233-43. doi: 10.4056/sigs.1784330.
7
Complete genome sequence of Leadbetterella byssophila type strain (4M15).
Stand Genomic Sci. 2011 Mar 4;4(1):2-12. doi: 10.4056/sigs.1413518.
8
Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24).
Stand Genomic Sci. 2010 Jun 15;2(3):290-9. doi: 10.4056/sigs.952166.
9
Complete genome sequence of Thermobispora bispora type strain (R51).
Stand Genomic Sci. 2010 Jun 15;2(3):318-26. doi: 10.4056/sigs.962171.
10

引用本文的文献

1
Evidence of homologous recombination as a driver of diversity in .
Microb Genom. 2020 Dec;6(12). doi: 10.1099/mgen.0.000470. Epub 2020 Nov 11.
2
Characterization and Recognition of Brachyspira hampsonii sp. nov., a Novel Intestinal Spirochete That Is Pathogenic to Pigs.
J Clin Microbiol. 2016 Dec;54(12):2942-2949. doi: 10.1128/JCM.01717-16. Epub 2016 Sep 14.
5
Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).
Stand Genomic Sci. 2013 May 25;8(2):177-87. doi: 10.4056/sigs.3637201. eCollection 2013.

本文引用的文献

1
Prevalence and disease association of intestinal spirochaetes in chickens in eastern Australia.
Avian Pathol. 1999 Oct;28(5):447-54. doi: 10.1080/03079459994461.
2
Complete genome sequence of Kytococcus sedentarius type strain (541).
Stand Genomic Sci. 2009 Jul 20;1(1):12-20. doi: 10.4056/sigs.761.
3
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.
Nat Methods. 2010 Jun;7(6):455-7. doi: 10.1038/nmeth.1457. Epub 2010 May 2.
4
En route to a genome-based classification of Archaea and Bacteria?
Syst Appl Microbiol. 2010 Jun;33(4):175-82. doi: 10.1016/j.syapm.2010.03.003. Epub 2010 Apr 20.
5
How many bootstrap replicates are necessary?
J Comput Biol. 2010 Mar;17(3):337-54. doi: 10.1089/cmb.2009.0179.
6
Prodigal: prokaryotic gene recognition and translation initiation site identification.
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
7
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656.
8
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.
Nucleic Acids Res. 2010 Jan;38(Database issue):D346-54. doi: 10.1093/nar/gkp848. Epub 2009 Nov 13.
9
IMG ER: a system for microbial genome annotation expert review and curation.
Bioinformatics. 2009 Sep 1;25(17):2271-8. doi: 10.1093/bioinformatics/btp393. Epub 2009 Jun 27.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验