• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

嗜热双孢菌模式菌株(R51)的全基因组序列

Complete genome sequence of Thermobispora bispora type strain (R51).

作者信息

Liolios Konstantinos, Sikorski Johannes, Jando Marlen, Lapidus Alla, Copeland Alex, Glavina Tijana, Nolan Matt, Lucas Susan, Tice Hope, Cheng Jan-Fang, Han Cliff, Woyke Tanja, Goodwin Lynne, Pitluck Sam, Ivanova Natalia, Mavromatis Konstantinos, Mikhailova Natalia, Chertkov Olga, Kuske Cheryl, Chen Amy, Palaniappan Krishna, Land Miriam, Hauser Loren, Chang Yun-Juan, Jeffries Cynthia D, Detter John C, Brettin Thomas, Rohde Manfred, Göker Markus, Bristow James, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Klenk Hans-Peter, Kyrpides Nikos C

出版信息

Stand Genomic Sci. 2010 Jun 15;2(3):318-26. doi: 10.4056/sigs.962171.

DOI:10.4056/sigs.962171
PMID:21304716
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3035289/
Abstract

Thermobispora bispora (Henssen 1957) Wang et al. 1996 is the type species of the genus Thermobispora. This genus is of great interest because it is strictly thermophilic and because it has been shown for several of its members that the genome contains substantially distinct (6.4% sequence difference) and transcriptionally active 16S rRNA genes. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member from the suborder Streptosporangineae and the first genome sequence of a member of the genus Thermobispora. The 4,189,976 bp long genome with its 3,596 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

摘要

双孢嗜热放线菌(亨森,1957年)王等人,1996年,是嗜热放线菌属的模式种。该属备受关注,因为它是严格嗜热的,而且已表明其多个成员的基因组包含显著不同(序列差异6.4%)且具有转录活性的16S rRNA基因。在此,我们描述该生物体的特征,以及完整的基因组序列和注释。这是链孢囊菌亚目成员的第二个完整基因组序列,也是嗜热放线菌属成员的第一个基因组序列。这个长度为4,189,976 bp的基因组,包含3,596个蛋白质编码基因和63个RNA基因,是细菌和古菌基因组百科全书项目的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b97/3035289/14657535b95c/sigs.962171-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b97/3035289/992f68e5b7a0/sigs.962171-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b97/3035289/918a7a6e7be3/sigs.962171-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b97/3035289/14657535b95c/sigs.962171-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b97/3035289/992f68e5b7a0/sigs.962171-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b97/3035289/918a7a6e7be3/sigs.962171-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b97/3035289/14657535b95c/sigs.962171-f3.jpg

相似文献

1
Complete genome sequence of Thermobispora bispora type strain (R51).嗜热双孢菌模式菌株(R51)的全基因组序列
Stand Genomic Sci. 2010 Jun 15;2(3):318-26. doi: 10.4056/sigs.962171.
2
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).哥伦比亚氨基杆菌模式菌株(ALA-1)的全基因组序列
Stand Genomic Sci. 2010 Jun 15;2(3):280-9. doi: 10.4056/sigs.902116.
3
Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1).嗜硝土栖弧菌模式菌株(Yu37-1)的全基因组序列
Stand Genomic Sci. 2011 Feb 20;4(1):54-62. doi: 10.4056/sigs.1523807.
4
Complete genome sequence of Thermomonospora curvata type strain (B9).弯曲嗜热单孢菌模式菌株(B9)的全基因组序列
Stand Genomic Sci. 2011 Feb 20;4(1):13-22. doi: 10.4056/sigs.1453580.
5
Complete genome sequence of Brachyspira murdochii type strain (56-150).短螺旋体murdochii模式菌株(56-150)的全基因组序列
Stand Genomic Sci. 2010 Jun 15;2(3):260-9. doi: 10.4056/sigs.831993.
6
A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov.一项将双孢小双孢菌(Lechevalier,1965)转移至一个新属——嗜热双孢菌属(新属),命名为双孢嗜热双孢菌(新组合)的提议。
Int J Syst Bacteriol. 1996 Oct;46(4):933-8. doi: 10.1099/00207713-46-4-933.
7
Complete genome sequence of Meiothermus ruber type strain (21).嗜热栖热放线菌模式菌株(21)的全基因组序列
Stand Genomic Sci. 2010 Jul 29;3(1):26-36. doi: 10.4056/sigs.1032748.
8
Complete genome sequence of Marivirga tractuosa type strain (H-43).海线杆菌模式菌株(H-43)的全基因组序列
Stand Genomic Sci. 2011 Apr 29;4(2):154-62. doi: 10.4056/sigs.1623941.
9
Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).嗜热氢杆菌模式菌株(TK-6)的全基因组序列
Stand Genomic Sci. 2011 Apr 29;4(2):131-43. doi: 10.4056/sigs.1463589.
10
Complete genome sequence of Meiothermus silvanus type strain (VI-R2).嗜热栖热放线菌模式菌株(VI-R2)的全基因组序列
Stand Genomic Sci. 2010 Jul 29;3(1):37-46. doi: 10.4056/sigs.1042812.

引用本文的文献

1
"Freezing" Thermophiles: From One Temperature Extreme to Another.“嗜冷”嗜热菌:从一个温度极端到另一个温度极端
Microorganisms. 2022 Dec 6;10(12):2417. doi: 10.3390/microorganisms10122417.
2
Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions.高温堆肥的基因组解析宏基因组和宏转录组分析揭示了关键细菌及其代谢相互作用。
BMC Genomics. 2021 Sep 10;22(1):652. doi: 10.1186/s12864-021-07957-9.
3
Characterization of a uronate dehydrogenase from Thermobispora bispora for production of glucaric acid from hemicellulose substrate.

本文引用的文献

1
Complete genome sequence of Streptosporangium roseum type strain (NI 9100).玫瑰链孢囊菌模式菌株(NI 9100)的全基因组序列
Stand Genomic Sci. 2010 Jan 28;2(1):29-37. doi: 10.4056/sigs.631049.
2
Complete genome sequence of Kytococcus sedentarius type strain (541).久坐不动库克菌模式菌株(541)的全基因组序列
Stand Genomic Sci. 2009 Jul 20;1(1):12-20. doi: 10.4056/sigs.761.
3
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.GenePRIMP:原核基因组的基因预测改进流程。
从嗜热双歧杆菌中鉴定出一种尿苷二磷酸醛酸脱氢酶,用于从半纤维素底物生产葡萄糖醛酸。
World J Microbiol Biotechnol. 2018 Jun 23;34(7):102. doi: 10.1007/s11274-018-2486-8.
4
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics.通过宏基因组学和宏转录组学观察嗜热堆肥中的微生物群落结构和动态。
Sci Rep. 2016 Dec 12;6:38915. doi: 10.1038/srep38915.
5
Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis.比较群落蛋白质组学揭示放线菌糖苷水解酶家族12蛋白对结晶纤维素水解的意外重要性。
mBio. 2016 Aug 23;7(4):e01106-16. doi: 10.1128/mBio.01106-16.
6
Gifted microbes for genome mining and natural product discovery.用于基因组挖掘和天然产物发现的有天赋的微生物。
J Ind Microbiol Biotechnol. 2017 May;44(4-5):573-588. doi: 10.1007/s10295-016-1815-x. Epub 2016 Aug 12.
7
Thermophilic and alkaliphilic Actinobacteria: biology and potential applications.嗜热嗜碱放线菌:生物学特性与潜在应用
Front Microbiol. 2015 Sep 25;6:1014. doi: 10.3389/fmicb.2015.01014. eCollection 2015.
8
Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T)).化能异养型土壤细菌蓝糖单孢菌模式菌株(NA-134(T))的基因组序列。
Stand Genomic Sci. 2013 Sep 30;9(1):28-41. doi: 10.4056/sigs.4207886. eCollection 2013 Oct 16.
9
High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production.高通量纳米结构引发质谱筛选微生物生长条件以实现最大β-葡萄糖苷酶产量。
Front Microbiol. 2013 Dec 6;4:365. doi: 10.3389/fmicb.2013.00365. eCollection 2013.
10
A novel highly thermostable xylanase stimulated by Ca2+ from Thermotoga thermarum: cloning, expression and characterization.一种新型嗜热耐热木聚糖酶,受来自 Thermotoga thermarum 的 Ca2+ 刺激:克隆、表达和特性分析。
Biotechnol Biofuels. 2013 Feb 18;6(1):26. doi: 10.1186/1754-6834-6-26.
Nat Methods. 2010 Jun;7(6):455-7. doi: 10.1038/nmeth.1457. Epub 2010 May 2.
4
En route to a genome-based classification of Archaea and Bacteria?是否正在通往基于基因组的古菌和细菌分类的路上?
Syst Appl Microbiol. 2010 Jun;33(4):175-82. doi: 10.1016/j.syapm.2010.03.003. Epub 2010 Apr 20.
5
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格:原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
6
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.从适应柳枝稷的堆肥群落中靶向发现糖苷水解酶。
PLoS One. 2010 Jan 21;5(1):e8812. doi: 10.1371/journal.pone.0008812.
7
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.基于系统发育的细菌和古菌基因组百科全书。
Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656.
8
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.《基因组在线数据库(GOLD)》2009 年报告:基因组和宏基因组项目及其相关元数据的现状。
Nucleic Acids Res. 2010 Jan;38(Database issue):D346-54. doi: 10.1093/nar/gkp848. Epub 2009 Nov 13.
9
IMG ER: a system for microbial genome annotation expert review and curation.IMG ER:一个用于微生物基因组注释专家评审和整理的系统。
Bioinformatics. 2009 Sep 1;25(17):2271-8. doi: 10.1093/bioinformatics/btp393. Epub 2009 Jun 27.
10
An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa.基于16S rRNA基因序列的放线菌纲高级分类单元结构更新及定义,提议设立两个新亚目和四个新科,并对现有高级分类单元进行修订描述。
Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):589-608. doi: 10.1099/ijs.0.65780-0.