Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, United States.
Biochemistry. 2011 Mar 15;50(10):1582-9. doi: 10.1021/bi1018545. Epub 2011 Feb 9.
Laser-induced temperature jump relaxation spectroscopy was used to probe the effect of osmolytes on the microscopic rate constants of the lactate dehydrogenase-catalyzed reaction. NADH fluorescence and absorption relaxation kinetics were measured for the lactate dehydrogenase (LDH) reaction system in the presence of varying amounts of trimethylamine N-oxide (TMAO), a protein-stabilizing osmolyte, or urea, a protein-destabilizing osmolyte. Trimethylamine N-oxide (TMAO) at a concentration of 1 M strongly increases the rate of hydride transfer, nearly nullifies its activation energy, and also slightly increases the enthalpy of hydride transfer. In 1 M urea, the hydride transfer enthalpy is almost nullified, but the activation energy of the step is not affected significantly. TMAO increases the preference of the closed conformation of the active site loop in the LDH·NAD(+)·lactate complex; urea decreases it. The loop opening rate in the LDH·NADH·pyruvate complex changes its temperature dependence to inverse Arrhenius with TMAO. In this complex, urea accelerates the loop motion, without changing the loop opening enthalpy. A strong, non-Arrhenius decrease in the pyruvate binding rate in the presence of TMAO offers a decrease in the fraction of the open loop, pyruvate binding competent form at higher temperatures. The pyruvate off rate is not affected by urea but decreases with TMAO. Thus, the osmolytes strongly affect the rates and thermodynamics of specific events along the LDH-catalyzed reaction: binding of substrates, loop closure, and the chemical event. Qualitatively, these results can be understood as an osmolyte-induced change in the energy landscape of the protein complexes, shifting the conformational nature of functional substates within the protein ensemble.
激光诱导温度跃变弛豫光谱被用来探测渗透剂对乳酸脱氢酶催化反应的微观速率常数的影响。在存在不同浓度的三甲基氧化胺(TMAO)或脲的情况下,测量了乳酸脱氢酶(LDH)反应体系的NADH 荧光和吸收弛豫动力学,TMAO 是一种稳定蛋白质的渗透剂,而脲是一种破坏蛋白质的渗透剂。在 1 M 的浓度下,TMAO 强烈地增加了氢化物转移的速率,几乎消除了其活化能,并且略微增加了氢化物转移的焓。在 1 M 的脲中,氢化物转移焓几乎被消除,但步骤的活化能没有受到显著影响。TMAO 增加了 LDH·NAD(+)·乳酸复合物中活性位点环的封闭构象的偏好;脲降低了它。在 LDH·NADH·丙酮酸复合物中,环打开率的温度依赖性随着 TMAO 的变化而变为反 Arrhenius。在这个复合物中,脲加速了环的运动,而不改变环打开焓。在 TMAO 的存在下,强烈的、非 Arrhenius 的丙酮酸结合速率的降低导致在较高温度下开放环、丙酮酸结合能力形式的分数降低。脲不影响丙酮酸的脱离速率,但 TMAO 会降低其脱离速率。因此,渗透剂强烈地影响着 LDH 催化反应中特定事件的速率和热力学:底物的结合、环的闭合和化学事件。从定性的角度来看,这些结果可以被理解为渗透剂诱导的蛋白质复合物能量景观的变化,改变了蛋白质集合内功能亚基的构象性质。