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静电相互作用介导 obscurin 与小锚蛋白 1 的结合:生化和分子建模研究。

Electrostatic interactions mediate binding of obscurin to small ankyrin 1: biochemical and molecular modeling studies.

机构信息

Department of Physiology, University of Maryland School of Medicine, Baltimore, MD, USA.

出版信息

J Mol Biol. 2011 Apr 29;408(2):321-34. doi: 10.1016/j.jmb.2011.01.053. Epub 2011 Feb 17.

Abstract

Small ankyrin 1 (sAnk1; also known as Ank1.5) is an integral protein of the sarcoplasmic reticulum (SR) in skeletal and cardiac muscle cells, where it is thought to bind to the C-terminal region of obscurin, a large modular protein that surrounds the contractile apparatus. Using fusion proteins in vitro, in combination with site-directed mutagenesis and surface plasmon resonance measurements, we previously showed that the binding site on sAnk1 for obscurin consists, in part, of six lysine and arginine residues. Here we show that four charged residues in the high-affinity binding site on obscurin for sAnk1 (between residues 6316 and 6345), consisting of three glutamates and a lysine, are necessary, but not sufficient, for this site on obscurin to bind to sAnk1 with high affinity. We also identify specific complementary mutations in sAnk1 that can partially or completely compensate for the changes in binding caused by charge-switching mutations in obscurin. We used molecular modeling to develop structural models of residues 6322-6339 of obscurin bound to sAnk1. The models, based on a combination of Brownian and molecular dynamics simulations, predict that the binding site on sAnk1 for obscurin is organized as two ankyrin-like repeats, with the last α-helical segment oriented at an angle to nearby helices, allowing lysine 6338 of obscurin to form an ionic interaction with aspartate 111 of sAnk1. This prediction was validated by double-mutant cycle experiments. Our results are consistent with a model in which electrostatic interactions between specific pairs of side chains on obscurin and sAnk1 promote binding and complex formation.

摘要

小锚蛋白 1(sAnk1;也称为 Ank1.5)是骨骼肌和心肌细胞肌质网(SR)的整合蛋白,据认为它与 obscurin 的 C 端区域结合, obscurin 是一种围绕收缩装置的大型模块化蛋白。我们以前使用体外融合蛋白,结合定点突变和表面等离子体共振测量,表明 sAnk1 与 obscurin 结合的结合位点部分由六个赖氨酸和精氨酸残基组成。在这里,我们表明 obscurin 上与 sAnk1 高亲和力结合的高亲和力结合位点上的四个带电残基(位于残基 6316 和 6345 之间),由三个谷氨酸和一个赖氨酸组成,是必需的,但不足以使 obscurin 上的这个位点与 sAnk1 以高亲和力结合。我们还确定了 obscurin 上的特定互补突变,这些突变可以部分或完全补偿由于 obscurin 中的电荷转换突变引起的结合变化。我们使用分子建模来开发与 sAnk1 结合的 obscurin 残基 6322-6339 的结构模型。这些模型基于布朗运动和分子动力学模拟的组合,预测 obscurin 与 sAnk1 的结合位点组织为两个锚蛋白样重复,最后一个α-螺旋片段定向与附近的螺旋成一定角度,使 obscurin 的赖氨酸 6338 与 sAnk1 的天冬氨酸 111 形成离子相互作用。双突变循环实验验证了这一预测。我们的结果与一种模型一致,该模型认为 obscurin 和 sAnk1 上特定侧链对之间的静电相互作用促进了结合和复合物的形成。

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