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利用 13C 富集和固态 NMR 阐明氨基酸掺入拖丝蜘蛛丝中的代谢途径。

Elucidating metabolic pathways for amino acid incorporation into dragline spider silk using 13C enrichment and solid state NMR.

机构信息

Department of Molecular Biology, University of Wyoming, 16th and Gibbon, Laramie, WY 82070, USA.

出版信息

Comp Biochem Physiol A Mol Integr Physiol. 2011 Jul;159(3):219-24. doi: 10.1016/j.cbpa.2011.02.010. Epub 2011 Feb 17.

DOI:10.1016/j.cbpa.2011.02.010
PMID:21334448
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3624022/
Abstract

Spider silk has been evolutionarily optimized for contextual mechanical performance over the last 400 Ma. Despite precisely balanced mechanical properties, which have yet to be reproduced, the underlying molecular architecture of major ampullate spider silk can be simplified being viewed as a versatile block copolymer. Four primary amino acid motifs: polyalanine, (GA)(n), GPGXX, and GGX (X = G,A,S,Q,L,Y) will be considered in this study. Although synthetic mimetics of many of these amino acid motifs have been produced in several biological systems, the source of spider silk's mechanical integrity remains elusive. Mechanical robustness may be a product not only of the amino acid structure but also of the tertiary structure of the silk. Historically, solid state nuclear magnetic resonance (ssNMR) has been used to reveal the crystalline structure of the polyalanine motif; however, limitations in amino acid labeling techniques have obscured the structures of the GGX and GPGXX motifs thought to be responsible for the structural mobility of spider silk. We describe the use of metabolic pathways to label tyrosine for the first time as well as to improve the labeling efficiency of proline. These improved labeling techniques will allow the previously unknown tertiary structures of major ampullate silk to be probed.

摘要

蜘蛛丝在过去的 400 万年中已经进化到可以适应上下文的机械性能。尽管其精确平衡的机械性能尚未被复制,但主要壶腹蛛丝的基本分子结构可以被简化为一种通用的嵌段共聚物。在本研究中,将考虑四个主要的氨基酸基序:聚丙氨酸、(GA)(n)、GPGXX 和 GGX(X = G、A、S、Q、L、Y)。尽管许多这些氨基酸基序的合成类似物已经在几个生物系统中产生,但蜘蛛丝机械完整性的来源仍然难以捉摸。机械坚固性可能不仅是氨基酸结构的产物,也是丝的三级结构的产物。从历史上看,固态核磁共振(ssNMR)已被用于揭示聚丙氨酸基序的晶体结构;然而,由于氨基酸标记技术的限制,负责蜘蛛丝结构灵活性的 GGX 和 GPGXX 基序的结构仍然不清楚。我们首次描述了使用代谢途径来标记酪氨酸以及提高脯氨酸的标记效率。这些改进的标记技术将允许探测主要壶腹丝以前未知的三级结构。

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Chem Commun (Camb). 2010 Sep 28;46(36):6714-6. doi: 10.1039/c0cc00829j. Epub 2010 Aug 23.
2
Structure and dynamics of aromatic residues in spider silk: 2D carbon correlation NMR of dragline fibers.蜘蛛丝中芳香族残基的结构和动力学:牵引丝的 2D 碳相关 NMR。
Biomacromolecules. 2010 Jan 11;11(1):168-74. doi: 10.1021/bm901039e.
3
Amino acid analysis of peptides using isobaric-tagged isotope dilution LC-MS/MS.使用等压标记同位素稀释液相色谱-串联质谱法对肽段进行氨基酸分析。
Anal Chem. 2009 May 15;81(10):3979-85. doi: 10.1021/ac900367q.
4
Determining secondary structure in spider dragline silk by carbon-carbon correlation solid-state NMR spectroscopy.通过碳-碳相关固态核磁共振光谱法测定蜘蛛拖牵丝的二级结构
J Am Chem Soc. 2008 Jul 30;130(30):9871-7. doi: 10.1021/ja8021208. Epub 2008 Jul 2.
5
Solid-state NMR investigation of major and minor ampullate spider silk in the native and hydrated states.天然态和水合态下主要和次要壶腹蛛丝的固态核磁共振研究
Biomacromolecules. 2008 Feb;9(2):651-7. doi: 10.1021/bm700950u. Epub 2008 Jan 3.
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An investigation of the divergence of major ampullate silk fibers from Nephila clavipes and Argiope aurantia.对来自金蛛和横纹金蛛的主要壶腹状丝纤维的差异研究。
Biomacromolecules. 2005 Nov-Dec;6(6):3095-9. doi: 10.1021/bm050421e.
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The role of [Delta]1-pyrroline-5-carboxylate dehydrogenase in proline degradation.Δ1-吡咯啉-5-羧酸脱氢酶在脯氨酸降解中的作用。
Plant Cell. 2004 Dec;16(12):3413-25. doi: 10.1105/tpc.104.023622. Epub 2004 Nov 17.
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Toxicity of free proline revealed in an arabidopsis T-DNA-tagged mutant deficient in proline dehydrogenase.在一个缺乏脯氨酸脱氢酶的拟南芥T-DNA标签突变体中揭示了游离脯氨酸的毒性。
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