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用有理速率定律对随机动力学模型进行矩封闭近似。

Moment closure approximations for stochastic kinetic models with rational rate laws.

机构信息

School of Mathematics & Statistics, Newcastle University, Newcastle upon Tyne, NE1 7RU, United Kingdom.

出版信息

Math Biosci. 2011 Jun;231(2):99-104. doi: 10.1016/j.mbs.2011.02.006. Epub 2011 Feb 19.

Abstract

Stochastic models are often used when modelling chemical species that have low numbers of molecules. However, as these models become large, it can become computationally expensive to simulate even a single realisation of the system since even efficient simulation techniques have a high computational cost. One possible technique to approximate the stochastic system is moment closure. The moment closure approximation is used to provide analytic approximations to non-linear stochastic models. Until now, this approximation has only been applied to models with polynomial rate laws. In this paper we extend the moment closure method to cover models with rational rate laws.

摘要

随机模型通常用于模拟分子数量较少的化学物质。然而,随着这些模型变得庞大,即使模拟系统的单个实例也可能变得计算成本高昂,因为即使是高效的模拟技术也具有高计算成本。一种可能的近似随机系统的技术是矩闭合。矩闭合逼近用于对非线性随机模型提供分析逼近。到目前为止,这种逼近仅应用于具有多项式速率定律的模型。在本文中,我们将矩闭合方法扩展到涵盖具有有理速率定律的模型。

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