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芳香族氨基酸羟化酶催化循环中铁-氧羟化物种的形成。

Formation of the iron-oxo hydroxylating species in the catalytic cycle of aromatic amino acid hydroxylases.

机构信息

Department of Chemistry, University of Bergen, Allégaten 41, 5007 Bergen, Norway.

出版信息

Chemistry. 2011 Mar 21;17(13):3746-58. doi: 10.1002/chem.201002910. Epub 2011 Feb 24.

DOI:10.1002/chem.201002910
PMID:21351297
Abstract

The first part of the catalytic cycle of the pterin-dependent, dioxygen-using nonheme-iron aromatic amino acid hydroxylases, leading to the Fe(IV)=O hydroxylating intermediate, has been investigated by means of density functional theory. The starting structure in the present investigation is the water-free Fe-O(2) complex cluster model that represents the catalytically competent form of the enzymes. A model for this structure was obtained in a previous study of water-ligand dissociation from the hexacoordinate model complex of the X-ray crystal structure of the catalytic domain of phenylalanine hydroxylase in complex with the cofactor (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH(4)) (PAH-Fe(II)-BH(4)). The O-O bond rupture and two-electron oxidation of the cofactor are found to take place via a Fe-O-O-BH(4) bridge structure that is formed in consecutive radical reactions involving a superoxide ion, O(2)(-). The overall effective free-energy barrier to formation of the Fe(IV)=O species is calculated to be 13.9 kcal  mol(-1), less than 2 kcal  mol(-1) lower than that derived from experiment. The rate-limiting step is associated with a one-electron transfer from the cofactor to dioxygen, whereas the spin inversion needed to arrive at the quintet state in which the O-O bond cleavage is finalized, essentially proceeds without activation.

摘要

蝶呤依赖性、耗氧非血红素铁芳香族氨基酸羟化酶的催化循环的第一部分,导致 Fe(IV)=O 羟化中间物,已通过密度泛函理论进行了研究。本研究中的起始结构是无水 Fe-O(2) 络合物簇模型,代表了酶的催化能力形式。该结构的模型在前一项研究中获得,该研究涉及从苯丙氨酸羟化酶催化结构域与辅因子(6R)-L-erythro-5,6,7,8-四氢生物蝶呤(BH(4))(PAH-Fe(II)-BH(4))的六配位模型络合物中除去水配体。发现 O-O 键断裂和辅因子的两电子氧化是通过 Fe-O-O-BH(4) 桥结构发生的,该桥结构是在涉及超氧化物离子 O(2)(-)的连续自由基反应中形成的。形成 Fe(IV)=O 物种的总有效自由能势垒计算为 13.9 kcal  mol(-1),比实验得出的值低 2 kcal  mol(-1)。限速步骤与辅因子向氧气的单电子转移有关,而自旋反转是在 O-O 键断裂完成的 quintet 状态下进行的,实际上不需要激活。

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