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曲霉属黄曲霉分离株的分子分型方法研究进展。

A review molecular typing methods for Aspergillus flavus isolates.

机构信息

Faculté de médecine, Laboratoire de biologie moléculaire parasitaire et fongique, Sfax, Tunisie.

出版信息

Mycopathologia. 2011 Aug;172(2):83-93. doi: 10.1007/s11046-011-9406-x. Epub 2011 Mar 3.

DOI:10.1007/s11046-011-9406-x
PMID:21369748
Abstract

Aspergillus flavus is the second most important Aspergillus species causing human infections. The importance of this fungus increases in regions with a dry and hot climate. Small phylogenetic studies in Aspergillus flavus indicate that the morphological species contains several genetically isolated species. Different genotyping methods have been developed and employed in order to better understand the genetic and epidemiological relationships between environmental and clinical isolates. Understanding pathogen distribution and relatedness is essential for determining the epidemiology of nosocomial infections and aiding in the design of rational pathogen control methods. Typing techniques can also give us a deeper understanding of the colonization pattern in patients. Most of these studies focused on Aspergillus fumigatus because it is medically the most isolated species. To date, there has not been any publication exclusively reviewing the molecular typing techniques for Aspergillus flavus in the literature. This article reviews all these different available methods for this organism.

摘要

黄曲霉是第二重要的曲霉属物种,可引起人类感染。在干燥和炎热气候的地区,这种真菌的重要性增加。黄曲霉的小型系统发育研究表明,形态物种包含几个遗传上隔离的物种。已经开发并采用了不同的基因分型方法,以便更好地理解环境和临床分离物之间的遗传和流行病学关系。了解病原体的分布和相关性对于确定医院感染的流行病学以及帮助设计合理的病原体控制方法至关重要。分型技术还可以使我们更深入地了解患者的定植模式。这些研究大多集中在烟曲霉上,因为它是医学上分离最多的物种。迄今为止,文献中尚无专门针对黄曲霉的分子分型技术的出版物。本文综述了该生物的所有这些不同的可用方法。

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本文引用的文献

1
Microsatellite typing to trace Aspergillus flavus infections in a hematology unit.微卫星分型追踪血液科曲霉属黄曲霉菌感染。
J Clin Microbiol. 2010 Jul;48(7):2396-401. doi: 10.1128/JCM.01269-09. Epub 2010 Apr 21.
2
What does genetic diversity of Aspergillus flavus tell us about Aspergillus oryzae?黄曲霉的遗传多样性能告诉我们关于米曲霉的什么信息?
Int J Food Microbiol. 2010 Apr 15;138(3):189-99. doi: 10.1016/j.ijfoodmicro.2010.01.033. Epub 2010 Feb 1.
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Genetic isolation among sympatric vegetative compatibility groups of the aflatoxin-producing fungus Aspergillus flavus.
Antimicrob Agents Chemother. 2017 Apr 24;61(5). doi: 10.1128/AAC.00004-17. Print 2017 May.
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Microsatellite Typing of Aspergillus flavus Strains in a Tunisian Onco-hematology Unit.突尼斯肿瘤血液科黄曲霉菌株的微卫星分型
Mycopathologia. 2016 Apr;181(3-4):175-84. doi: 10.1007/s11046-015-9962-6. Epub 2015 Nov 18.
5
The proportion of non-aflatoxigenic strains of the Aspergillus flavus/oryzae complex from meju by analyses of the aflatoxin biosynthetic genes.采用黄曲霉/米曲霉复合体系产毒基因分析方法,从霉豆腐中分离得到非产毒菌株的比例。
J Microbiol. 2013 Dec;51(6):766-72. doi: 10.1007/s12275-013-3128-3. Epub 2013 Dec 19.
6
Simple and highly discriminatory VNTR-based multiplex PCR for tracing sources of Aspergillus flavus isolates.用于追踪黄曲霉分离株来源的简单且具有高度区分能力的基于 VNTR 的多重 PCR 方法。
PLoS One. 2012;7(9):e44204. doi: 10.1371/journal.pone.0044204. Epub 2012 Sep 17.
同域产黄曲霉毒素真菌黄曲霉营养体亲和群的遗传隔离。
Mol Ecol. 2010 Jan;19(2):269-80. doi: 10.1111/j.1365-294X.2009.04467.x. Epub 2009 Dec 17.
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Proximal subungual onychomycosis caused by Aspergillus flavus in a HIV-positive patient.
Indian J Dermatol Venereol Leprol. 2009 Jul-Aug;75(4):410-2. doi: 10.4103/0378-6323.53152.
5
Invasive aspergillosis: epidemiology and environmental study in haematology patients (Sfax, Tunisia).侵袭性曲霉菌病:血液科患者的流行病学和环境研究(突尼斯,斯法克斯)。
Mycoses. 2010 Sep;53(5):443-7. doi: 10.1111/j.1439-0507.2009.01710.x. Epub 2009 Jun 4.
6
Aspergillus flavus: an emerging non-fumigatus Aspergillus species of significance.黄曲霉:一种具有重要意义的新兴非烟曲霉菌种。
Mycoses. 2009 May;52(3):206-22. doi: 10.1111/j.1439-0507.2008.01642.x. Epub 2009 Jan 14.
7
Genetic characterization of Brazilian strains of Aspergillus flavus using DNA markers.利用DNA标记对巴西黄曲霉菌株进行基因特征分析。
Genet Mol Res. 2008 Aug 5;7(3):706-17. doi: 10.4238/vol7-3gmr422.
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Phylogenetic analysis of Aspergillus species using DNA sequences from four loci.利用来自四个基因座的DNA序列对曲霉菌种进行系统发育分析。
Mycologia. 2008 Mar-Apr;100(2):205-26. doi: 10.3852/mycologia.100.2.205.
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Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus.致病真菌烟曲霉的多位点序列分型
J Clin Microbiol. 2007 May;45(5):1469-77. doi: 10.1128/JCM.00064-07. Epub 2007 Mar 21.
10
Nucleotide polymorphisms associated with Internal Transcribed Spacer (ITS) regions of ocular isolates of Aspergillus flavus.与黄曲霉眼部分离株内部转录间隔区(ITS)区域相关的核苷酸多态性。
J Microbiol Methods. 2007 Jan;68(1):1-10. doi: 10.1016/j.mimet.2006.05.021. Epub 2006 Sep 7.