Nakano Tatsuya
Kokuritsu Iyakuhin Shokuhin Eisei Kenkyusho Hokoku. 2010(128):34-8.
Kitaura et al. (Chem. Phys. Lett. 312, 319-324 (1999)) have proposed an ab initio fragment molecular orbital (FMO) method by which large molecules such as proteins can be easily treated with chemical accuracy. In the ab initio FMO method, a molecule or a molecular cluster is divided into fragments, and the MO calculations on the fragments (monomers) and the fragment pairs (dimers) are performed to obtain the total energy that is expressed as a summation of the fragment energies and inter-fragment interaction energies (IFIEs). In this paper, we provide a brief description of the ab initio FMO method and demonstrate recent applications to the biomacromolecules.
北浦等人(《化学物理快报》312, 319 - 324 (1999))提出了一种从头算片段分子轨道(FMO)方法,通过该方法可以以化学精度轻松处理诸如蛋白质等大分子。在从头算FMO方法中,将一个分子或分子簇划分为片段,并对片段(单体)和片段对(二聚体)进行分子轨道计算,以获得总能量,该总能量表示为片段能量和片段间相互作用能(IFIEs)之和。在本文中,我们简要介绍了从头算FMO方法,并展示了其在生物大分子方面的最新应用。