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半经验分子轨道法在溶液化学中的最优策略。II. 在QM/MM 框架中重现静电相互作用的首要重要性。

An optimum strategy for solution chemistry using semiempirical molecular orbital method. II. Primary importance of reproducing electrostatic interaction in the QM/MM framework.

机构信息

Graduate School of Information Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan.

出版信息

J Comput Chem. 2010 Nov 15;31(14):2628-41. doi: 10.1002/jcc.21558.

DOI:10.1002/jcc.21558
PMID:20740563
Abstract

For the purpose of executing direct dynamic and statistical calculation of chemical reactions in solution, we proposed an optimum strategy using semiempirical molecular orbital (MO) method with neglect of diatomic differential overlap (NDDO) approximation with specific solution reaction parameters (SSRPs), that is, the NDDO-SSRP method. It has been further extended to develop the NDDO-MAIS-SSRP method, which is the NDDO-SSRP method reinforced with the method adopted for intermolecular studies (MAIS), to correct the description of the intermolecular core-core repulsion interaction energy. In this strategy, the empirical parameters of the semiempirical MO method are optimized individually for a target chemically reacting molecular system by reference to the ab initio MO calculation data for a lot of instantaneous geometries on the potential energy surface near the reaction path. For demonstration, the NDDO-MAIS-SSRP method was applied, within the QM/MM framework, to a molecular cluster, that is, a couple of a QM solute NH(3)-H(2)O molecule pair and a MM solvent H(2)O molecule. The NDDO-MAIS-SSRP method can reproduce the electrostatic energy in the region R > 4.0 A, though the electrostatic energy shows large difference with those of MP2 level calculations in the region R < 4.0 A in some cases. Both the NDDO-SSRP and the NDDO-MAIS-SSRP methods could promise in the dynamical application to chemical reaction in solution (Takenaka et al., Chem Phys Lett 2010, 485, 119; Koyano et al., Bull Chem Soc Jpn, in press).

摘要

为了在溶液中执行化学反应的直接动态和统计计算,我们提出了一种使用忽略双原子微分重叠(NDDO)近似的半经验分子轨道(MO)方法的最佳策略,并结合特定溶液反应参数(SSRPs),即 NDDO-SSR 方法。它进一步扩展到开发 NDDO-MAIS-SSR 方法,该方法是 NDDO-SSR 方法与用于分子间研究的方法(MAIS)相结合,以纠正对分子间核心核心排斥相互作用能的描述。在该策略中,半经验 MO 方法的经验参数通过参考目标化学反应分子系统的大量瞬态几何结构的从头算 MO 计算数据来单独优化,这些数据位于反应路径附近的势能表面上。为了演示,在 QM/MM 框架内,将 NDDO-MAIS-SSR 方法应用于分子簇,即一对 QM 溶质 NH(3)-H(2)O 分子对和 MM 溶剂 H(2)O 分子。尽管在某些情况下,NDDO-MAIS-SSR 方法在 R < 4.0 A 区域的静电能与 MP2 水平计算的静电能有很大差异,但它可以再现 R > 4.0 A 区域的静电能。NDDO-SSR 和 NDDO-MAIS-SSR 方法都可以在溶液中化学反应的动力学应用中得到保证(Takenaka 等人,Chem Phys Lett 2010, 485, 119; Koyano 等人,Bull Chem Soc Jpn,即将出版)。

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