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土壤中丰度较高的水田微生物疣微菌属 Opitutus terrae PB90-1 的基因组序列。

Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.

机构信息

Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.

出版信息

J Bacteriol. 2011 May;193(9):2367-8. doi: 10.1128/JB.00228-11. Epub 2011 Mar 11.

DOI:10.1128/JB.00228-11
PMID:21398538
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3133072/
Abstract

Bacteria of the deeply branching phylum Verrucomicrobia are rarely cultured yet commonly detected in metagenomic libraries from aquatic, terrestrial, and intestinal environments. We have sequenced the genome of Opitutus terrae PB90-1, a fermentative anaerobe within this phylum, isolated from rice paddy soil and capable of propionate production from plant-derived polysaccharides.

摘要

深分枝门疣微菌中的细菌很少被培养，但在水生、陆地和肠道环境的宏基因组文库中经常被检测到。我们已经对 Opitutus terrae PB90-1 的基因组进行了测序，它是该门内的一种发酵性厌氧菌，从稻田土壤中分离出来，能够从植物来源的多糖中生产丙酸。

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2
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Arch Microbiol. 2011 Apr;193(4):307-12. doi: 10.1007/s00203-010-0666-5. Epub 2010 Dec 24.
3
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.GenePRIMP：原核基因组的基因预测改进流程。
Nat Methods. 2010 Jun;7(6):455-7. doi: 10.1038/nmeth.1457. Epub 2010 May 2.
4
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格：原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
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PLoS Biol. 2010 Jan 19;8(1):e1000281. doi: 10.1371/journal.pbio.1000281.
6
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10
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J Mol Biol. 2004 Jul 16;340(4):783-95. doi: 10.1016/j.jmb.2004.05.028.