New Zealand Forest Research Institute Ltd, Private Bag 3020, Rotorua 3046, New Zealand.
Ann Bot. 2011 Oct;108(6):1001-11. doi: 10.1093/aob/mcr067. Epub 2011 Apr 5.
During their lifetime, tree stems take a series of successive nested shapes. Individual tree growth models traditionally focus on apical growth and architecture. However, cambial growth, which is distributed over a surface layer wrapping the whole organism, equally contributes to plant form and function. This study aims at providing a framework to simulate how organism shape evolves as a result of a secondary growth process that occurs at the cellular scale.
The development of the vascular cambium is modelled as an expanding surface using the level set method. The surface consists of multiple compartments following distinct expansion rules. Growth behaviour can be formulated as a mathematical function of surface state variables and independent variables to describe biological processes.
The model was coupled to an architectural model and to a forest stand model to simulate cambium dynamics and wood formation at the scale of the organism. The model is able to simulate competition between cambia, surface irregularities and local features. Predicting the shapes associated with arbitrarily complex growth functions does not add complexity to the numerical method itself.
Despite their slenderness, it is sometimes useful to conceive of trees as expanding surfaces. The proposed mathematical framework provides a way to integrate through time and space the biological and physical mechanisms underlying cambium activity. It can be used either to test growth hypotheses or to generate detailed maps of wood internal structure.
树木的茎在其一生中会呈现一系列连续的嵌套形状。传统的树木生长模型主要关注于顶端生长和结构。然而,形成层的生长,其分布在包裹整个生物体的表面层上,同样对植物的形态和功能有贡献。本研究旨在提供一个框架,以模拟由于发生在细胞尺度上的次生生长过程而导致的生物体形状的演变。
使用水平集方法将维管形成层的发育模拟为扩展表面。该表面由多个遵循不同扩展规则的隔室组成。生长行为可以表述为表面状态变量和独立变量的数学函数,以描述生物过程。
该模型与建筑模型和森林模型相结合,以模拟生物体尺度上的形成层动态和木材形成。该模型能够模拟形成层之间的竞争、表面不规则性和局部特征。预测与任意复杂生长函数相关的形状不会给数值方法本身增加复杂性。
尽管树木很细长,但有时将其设想为扩展表面是有用的。所提出的数学框架提供了一种方法,可以随时间和空间整合形成层活动背后的生物学和物理机制。它可以用于测试生长假说,或生成木材内部结构的详细地图。