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本文引用的文献

1
A physiological model of softwood cambial growth.一个软木形成层生长的生理模型。
Tree Physiol. 2010 Oct;30(10):1235-52. doi: 10.1093/treephys/tpq068. Epub 2010 Jul 26.
2
CAMBIUM, a process-based model of daily xylem development in Eucalyptus.CAMBIUM,基于过程的模式,用于桉树的每日木质部发育。
J Theor Biol. 2010 May 21;264(2):395-406. doi: 10.1016/j.jtbi.2010.02.013. Epub 2010 Feb 16.
3
Modeling plant growth and development.植物生长与发育建模
Curr Opin Plant Biol. 2004 Feb;7(1):79-83. doi: 10.1016/j.pbi.2003.11.007.
4
Temporal water deficit and wood formation in Cryptomeria japonica.日本柳杉的暂时水分亏缺与木材形成
Tree Physiol. 2003 Aug;23(12):859-63. doi: 10.1093/treephys/23.12.859.
5
A mathematical model of pattern formation in the vascular cambium of trees.树木维管形成层中模式形成的数学模型。
J Theor Biol. 2002 May 21;216(2):147-58. doi: 10.1006/jtbi.2002.2551.
6
A fast marching level set method for monotonically advancing fronts.一种用于单调推进前沿的快速行进水平集方法。
Proc Natl Acad Sci U S A. 1996 Feb 20;93(4):1591-5. doi: 10.1073/pnas.93.4.1591.
7
Function and dynamics of auxin and carbohydrates during earlywood/latewood transition in scots pine.苏格兰松早材/晚材转变过程中生长素和碳水化合物的功能与动态变化
Plant Physiol. 2001 Apr;125(4):2029-39. doi: 10.1104/pp.125.4.2029.

使用水平集方法建立一个用于模拟形成层表面演变的数学框架。

A mathematical framework for modelling cambial surface evolution using a level set method.

机构信息

New Zealand Forest Research Institute Ltd, Private Bag 3020, Rotorua 3046, New Zealand.

出版信息

Ann Bot. 2011 Oct;108(6):1001-11. doi: 10.1093/aob/mcr067. Epub 2011 Apr 5.

DOI:10.1093/aob/mcr067
PMID:21470972
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3189832/
Abstract

BACKGROUND AND AIMS

During their lifetime, tree stems take a series of successive nested shapes. Individual tree growth models traditionally focus on apical growth and architecture. However, cambial growth, which is distributed over a surface layer wrapping the whole organism, equally contributes to plant form and function. This study aims at providing a framework to simulate how organism shape evolves as a result of a secondary growth process that occurs at the cellular scale.

METHODS

The development of the vascular cambium is modelled as an expanding surface using the level set method. The surface consists of multiple compartments following distinct expansion rules. Growth behaviour can be formulated as a mathematical function of surface state variables and independent variables to describe biological processes.

KEY RESULTS

The model was coupled to an architectural model and to a forest stand model to simulate cambium dynamics and wood formation at the scale of the organism. The model is able to simulate competition between cambia, surface irregularities and local features. Predicting the shapes associated with arbitrarily complex growth functions does not add complexity to the numerical method itself.

CONCLUSIONS

Despite their slenderness, it is sometimes useful to conceive of trees as expanding surfaces. The proposed mathematical framework provides a way to integrate through time and space the biological and physical mechanisms underlying cambium activity. It can be used either to test growth hypotheses or to generate detailed maps of wood internal structure.

摘要

背景与目的

树木的茎在其一生中会呈现一系列连续的嵌套形状。传统的树木生长模型主要关注于顶端生长和结构。然而,形成层的生长,其分布在包裹整个生物体的表面层上,同样对植物的形态和功能有贡献。本研究旨在提供一个框架,以模拟由于发生在细胞尺度上的次生生长过程而导致的生物体形状的演变。

方法

使用水平集方法将维管形成层的发育模拟为扩展表面。该表面由多个遵循不同扩展规则的隔室组成。生长行为可以表述为表面状态变量和独立变量的数学函数,以描述生物过程。

主要结果

该模型与建筑模型和森林模型相结合,以模拟生物体尺度上的形成层动态和木材形成。该模型能够模拟形成层之间的竞争、表面不规则性和局部特征。预测与任意复杂生长函数相关的形状不会给数值方法本身增加复杂性。

结论

尽管树木很细长,但有时将其设想为扩展表面是有用的。所提出的数学框架提供了一种方法,可以随时间和空间整合形成层活动背后的生物学和物理机制。它可以用于测试生长假说,或生成木材内部结构的详细地图。