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多元素指纹图谱分析和高通量测序鉴定出影响麻栎叶片真菌群落的多个因素。

Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage.

机构信息

Division of Biology, Kansas State University, Manhattan, KS, USA.

出版信息

Plant Signal Behav. 2010 Sep;5(9):1157-61. doi: 10.4161/psb.5.9.12681.

DOI:10.4161/psb.5.9.12681
PMID:21490423
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3115093/
Abstract

Diverse fungal mutualists, pathogens and saprobes colonize plant leaves. These fungi face a complex environment, in which stochastic dispersal interplays with abiotic and biotic filters. However, identification of the specific factors that drive the community assembly seems unattainable. We mined two broad data sets and identified chemical elements, to which dominant molecular operational taxonomic units (OTUs) in the foliage of a native tree respond most extremely. While many associations could be identified, potential complicating issues emerged. Those were related to unevenly distributed OTU frequency data, a large number of potentially explanatory variables, and the disproportionate effects of outlier observations.

摘要

多种多样的真菌共生体、病原体和腐生物定殖于植物叶片。这些真菌面临着一个复杂的环境,其中随机扩散与非生物和生物过滤器相互作用。然而,识别驱动群落组装的具体因素似乎是不可能的。我们挖掘了两个广泛的数据集,并确定了化学元素,这些元素是本地树种叶片中主要的分子分类操作单位(OTU)最极端响应的因素。虽然可以识别出许多关联,但也出现了潜在的复杂问题。这些问题与 OTU 频率数据分布不均、大量潜在的解释变量以及异常值观测的不成比例影响有关。

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本文引用的文献

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A meta-analysis of mycorrhizal responses to nitrogen, phosphorus, and atmospheric CO in field studies.一项关于田间研究中菌根对氮、磷和大气二氧化碳响应的荟萃分析。
New Phytol. 2004 Nov;164(2):347-355. doi: 10.1111/j.1469-8137.2004.01159.x.
2
Birch family and environmental conditions affect endophytic fungi in leaves.桦木科植物和环境条件影响叶片中的内生真菌。
Oecologia. 1999 Feb;118(2):151-156. doi: 10.1007/s004420050713.
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Canopy cover and leaf age affect colonization by tropical fungal endophytes: Ecological pattern and process in Theobroma cacao (Malvaceae).冠层覆盖和叶片年龄会影响热带真菌内生菌的定殖:可可(锦葵科)中的生态模式和过程。
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Diversity and host preference of leaf endophytic fungi in the Iwokrama Forest Reserve, Guyana.圭亚那伊沃克拉马森林保护区叶片内生真菌的多样性及其对宿主的偏好。
Mycologia. 2002 Mar-Apr;94(2):210-20.
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Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments.栎树叶片的真菌群落具有季节性动态变化,且在城市和非城市环境中存在差异。
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Fungal-fungal associations affect the assembly of endophyte communities in maize (Zea mays).真菌与真菌之间的相互作用影响玉米(Zea mays)内生菌群落的组装。
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Fragmented environment affects birch leaf endophytes.破碎化环境影响桦树叶内生菌。
New Phytol. 2007;175(3):547-553. doi: 10.1111/j.1469-8137.2007.02110.x.
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Antonie Van Leeuwenhoek. 2008 Jan-Feb;93(1-2):27-36. doi: 10.1007/s10482-007-9176-0. Epub 2007 Jul 4.
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Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots?叶部真菌内生菌的多样性与宿主范围:热带叶片是生物多样性热点地区吗?
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Microbial biogeography: putting microorganisms on the map.微生物生物地理学:绘制微生物的分布图
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