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PHENIX: a comprehensive Python-based system for macromolecular structure solution.PHENIX:一个基于Python的用于大分子结构解析的综合系统。
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925. Epub 2010 Jan 22.
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Phaser crystallographic software.相位结晶学软件。
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
4
Distinct roles of RalA and RalB in the progression of cytokinesis are supported by distinct RalGEFs.RalA和RalB在胞质分裂进程中的不同作用得到了不同Ral鸟苷酸交换因子(RalGEFs)的支持。
EMBO J. 2008 Sep 17;27(18):2375-87. doi: 10.1038/emboj.2008.166. Epub 2008 Aug 28.
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The RosettaDock server for local protein-protein docking.用于本地蛋白质-蛋白质对接的RosettaDock服务器。
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W233-8. doi: 10.1093/nar/gkn216. Epub 2008 Apr 28.
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Ral GTPases and cancer: linchpin support of the tumorigenic platform.Ral GTP酶与癌症:肿瘤发生平台的关键支撑
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7
Functional analysis of RalGPS2, a murine guanine nucleotide exchange factor for RalA GTPase.RalA GTP酶的鼠源鸟嘌呤核苷酸交换因子RalGPS2的功能分析
Exp Cell Res. 2007 Jul 1;313(11):2293-307. doi: 10.1016/j.yexcr.2007.03.016. Epub 2007 Mar 24.
8
Locating proteins in the cell using TargetP, SignalP and related tools.使用TargetP、SignalP及相关工具在细胞中定位蛋白质。
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9
A Ras-induced conformational switch in the Ras activator Son of sevenless.Ras激活因子“七less之子”中由Ras诱导的构象转换
Proc Natl Acad Sci U S A. 2006 Nov 7;103(45):16692-7. doi: 10.1073/pnas.0608127103. Epub 2006 Oct 30.
10
Specificity and expression of RalGPS as RalGEFs.RalGPS作为Ral鸟嘌呤核苷酸交换因子(RalGEFs)的特异性和表达
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Ral 特异性鸟嘌呤核苷酸交换因子 RalGPS1a 的 Cdc25 结构域研究。

Structural study of the Cdc25 domain from Ral-specific guanine-nucleotide exchange factor RalGPS1a.

机构信息

National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.

出版信息

Protein Cell. 2011 Apr;2(4):308-19. doi: 10.1007/s13238-011-1036-z. Epub 2011 Apr 14.

DOI:10.1007/s13238-011-1036-z
PMID:21494904
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4875206/
Abstract

The guanine-nucleotide exchange factor (GEF) RalGPS1a activates small GTPase Ral proteins such as RalA and RalB by stimulating the exchange of Ral bound GDP to GTP, thus regulating various downstream cellular processes. RalGPS1a is composed of an Nterminal Cdc25-like catalytic domain, followed by a PXXP motif and a C-terminal pleckstrin homology (PH) domain. The Cdc25 domain of RalGPS1a, which shares about 30% sequence identity with other Cdc25-domain proteins, is thought to be directly engaged in binding and activating the substrate Ral protein. Here we report the crystal structure of the Cdc25 domain of RalGPS1a. The bowl shaped structure is homologous to the Cdc25 domains of SOS and RasGRF1. The most remarkable difference between these three Cdc25 domains lies in their active sites, referred to as the helical hairpin region. Consistent with previous enzymological studies, the helical hairpin of RalGPS1a adopts a conformation favorable for substrate binding. A modeled RalGPS1a-RalA complex structure reveals an extensive binding surface similar to that of the SOS-Ras complex. However, analysis of the electrostatic surface potential suggests an interaction mode between the RalGPS1a active site helical hairpin and the switch 1 region of substrate RalA distinct from that of the SOS-Ras complex.

摘要

鸟嘌呤核苷酸交换因子(GEF)RalGPS1a 通过刺激 Ral 结合的 GDP 交换为 GTP,从而激活小 GTP 酶 Ral 蛋白,如 RalA 和 RalB,从而调节各种下游细胞过程。RalGPS1a 由一个 N 端 Cdc25 样催化结构域、一个 PXXP 基序和一个 C 端 pleckstrin 同源(PH)结构域组成。RalGPS1a 的 Cdc25 结构域与其他 Cdc25 结构域蛋白约有 30%的序列同一性,被认为直接参与结合和激活底物 Ral 蛋白。我们在这里报告了 RalGPS1a 的 Cdc25 结构域的晶体结构。碗状结构与 SOS 和 RasGRF1 的 Cdc25 结构域同源。这三个 Cdc25 结构域之间最显著的区别在于它们的活性位点,称为螺旋发夹区。与先前的酶学研究一致,RalGPS1a 的螺旋发夹呈有利于底物结合的构象。建模的 RalGPS1a-RalA 复合物结构揭示了一个广泛的结合表面,类似于 SOS-Ras 复合物。然而,静电表面电势分析表明,RalGPS1a 活性位点螺旋夹与底物 RalA 的开关 1 区域之间的相互作用模式不同于 SOS-Ras 复合物。