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一种具有苯甲酰保护基形成褶皱片状结构的新型双功能AT核苷。

A novel Janus-type AT nucleoside with benzoyl protecting groups forming a pleated-sheet structure.

作者信息

Pan Mei Ying, Wu Xiao Hua, Luo Dai Bing, Huang Wen, He Yang

机构信息

Laboratory of Ethnopharmacology, Institute for Nanobiomedical Technology and Membrane Biology, Regenerative Medicine Research Center, West China Hospital, West China Medical School, Sichuan University, No. 1 Keyuansilu, Gaopeng Dadao, Chengdu, Sichuan 610041, People's Republic of China.

出版信息

Acta Crystallogr C. 2011 May;67(Pt 5):o175-8. doi: 10.1107/S0108270111011383. Epub 2011 Apr 14.

DOI:10.1107/S0108270111011383
PMID:21540544
Abstract

The title compound, 5-amino-8-(2,3,5-tri-O-benzoyl-β-D-ribofuranosyl)pyrimido[4,5-d]pyrimidine-2,4(3H,8H)-dione methanol monosolvate, C(32)H(25)N(5)O(9)·CH(4)O, which crystallized slowly from methanol, exhibits an anti conformation with a glycosyl-bond torsion angle of χ=-141.28 (17)°. The furanose moiety adopts an N-type sugar puckering ((3)T(4)). The corresponding pseudorotation phase angle and maximum amplitude are P=24.5 (2)° and τ(m)=38.3 (2)°, respectively. In the solid state, one methanol molecule acts as a bridge joining adjacent nucleoside molecules head-to-head, leading to a pleated-ribbon supramolecular structure, with the base moieties located in the centre of the ribbon and the sugar residues protruding to the outside of the layers, as in a DNA helix. The pleated-ribbon supramolecular structure is tethered together into a two-dimensional infinite pleated-sheet structure through aromatic stacking between the nucleobase planes and the benzene rings of the benzoyl protecting groups on the 5'-OH group of furanose.

摘要

标题化合物5-氨基-8-(2,3,5-三-O-苯甲酰基-β-D-呋喃核糖基)嘧啶并[4,5-d]嘧啶-2,4(3H,8H)-二酮甲醇单溶剂合物C(32)H(25)N(5)O(9)·CH(4)O从甲醇中缓慢结晶,其糖基键扭转角χ = -141.28 (17)°,呈反式构象。呋喃糖部分采用N型糖环构象((3)T(4))。相应的假旋转相角和最大振幅分别为P = 24.5 (2)°和τ(m)= 38.3 (2)°。在固态中,一个甲醇分子作为桥将相邻的核苷分子头对头连接起来,形成一种褶带状超分子结构,碱基部分位于带的中心,糖残基突出到层的外侧,如同在DNA螺旋中一样。褶带状超分子结构通过核碱基平面与呋喃糖5'-OH基团上苯甲酰保护基的苯环之间的芳香堆积作用,连接成二维无限褶状片层结构。

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