Unit for Nano Science & Technology, Department of Chemical, Biological & Macromolecular Sciences, SN Bose National Centre for Basic Sciences, Block JD, Sector III, Salt Lake, Kolkata 700098, India.
Biochimie. 2011 Sep;93(9):1424-33. doi: 10.1016/j.biochi.2011.04.017. Epub 2011 Apr 29.
Enzymes and other bio-macromolecules are not only sensitive to physical parameters such as pH, temperature and solute composition but also to water activity. A universally instructive way to vary water activity is the addition of osmotically active but otherwise inert solvents which also mimic the condition of an intercellular milieu. In the present contribution, the role of hydration on the functionality of a proteolytic enzyme α-chymotrypsin (CHT) is investigated by modulating the water activity with the addition of polyethylene glycols (PEG with an average molecular weight of 400). The addition of PEG increases the affinity of the enzyme to its substrate, however, followed by a decrease in the turnover number (k(cat)). Energetic calculations show that entrance path for the substrate is favoured, whereas the exit channel is restricted with increasing concentration of the crowding agent. This decrease is attributed to the thinning of the hydration shell of the enzyme due to the loss of critical water residues from the hydration surface of the enzyme as evidenced from volumetric and compressibility measurements. The overall secondary and tertiary structures of CHT determined from far-UV and near-UV circular dichroism (CD) measurements show no considerable change in the studied osmotic stress range. From kinetic and equilibrium data, we calculate 115 ± 30 numbers of water molecules to be altered during the enzymatic catalysis of CHT. Spectroscopic observation of water relaxation and rotational dynamics of ANS-CHT complex at various concentrations of the osmoting agent also support the dehydration of the hydration layer. Such dehydration/hydration processes during turnover imply a significant contribution of solvation to the energetics of the conformational changes.
酶和其他生物大分子不仅对 pH 值、温度和溶质组成等物理参数敏感,还对水活度敏感。一种普遍的改变水活度的方法是添加具有渗透活性但其他方面惰性的溶剂,这些溶剂还模拟细胞间环境的条件。在本研究中,通过添加聚乙二醇(平均分子量为 400 的 PEG)来调节水活度,研究了水合作用对蛋白水解酶α-糜蛋白酶(CHT)功能的影响。PEG 的添加增加了酶对其底物的亲和力,但随后酶的周转率(kcat)下降。能量计算表明,底物的进入路径得到了促进,而随着拥挤剂浓度的增加,出口通道受到限制。这种下降归因于由于酶的水化表面上失去了关键的水残基,导致酶的水化壳变薄,这一点从体积和压缩性测量中得到了证明。从远紫外和近紫外圆二色性(CD)测量得出的 CHT 的整体二级和三级结构在研究的渗透压范围内没有明显变化。根据动力学和平衡数据,我们计算出在 CHT 的酶催化过程中,有 115±30 个水分子发生变化。在不同渗透压剂浓度下,ANS-CHT 复合物的水弛豫和旋转动力学的光谱观察也支持水合层的去水合作用。这种在周转率过程中的脱水/水合过程意味着溶剂化对构象变化的能量学有重要贡献。