轮虫弧菌 DAT722 株的基因组序列。
Genome sequence of Vibrio rotiferianus strain DAT722.
机构信息
The i3 Institute, University of Technology, Sydney, Broadway, NSW 2007, Australia.
出版信息
J Bacteriol. 2011 Jul;193(13):3381-2. doi: 10.1128/JB.05089-11. Epub 2011 May 6.
Abstract
Vibrio rotiferianus is a marine pathogen capable of causing disease in various aquatic organisms. We announce the genome sequence of V. rotiferianus DAT722, which has a large chromosomal integron containing 116 gene cassettes and is a model organism for studying the role of this system in vibrio evolution.
摘要
轮虫弧菌是一种海洋病原体，能够感染多种水生生物。我们宣布轮虫弧菌 DAT722 的基因组序列，它含有一个大型染色体整合子，包含 116 个基因盒，是研究该系统在弧菌进化中的作用的模式生物。
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本文引用的文献
1
Reordering contigs of draft genomes using the Mauve aligner.使用 Mauve 比对工具重新排列草图基因组的顺序。
Bioinformatics. 2009 Aug 15;25(16):2071-3. doi: 10.1093/bioinformatics/btp356. Epub 2009 Jun 10.
2
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
3
Integrons: mobilizable platforms that promote genetic diversity in bacteria.整合子：促进细菌遗传多样性的可移动平台。
Trends Microbiol. 2007 Jul;15(7):301-9. doi: 10.1016/j.tim.2007.05.004. Epub 2007 Jun 12.
4
Recovery and evolutionary analysis of complete integron gene cassette arrays from Vibrio.来自弧菌的完整整合子基因盒阵列的恢复与进化分析
BMC Evol Biol. 2006 Jan 18;6:3. doi: 10.1186/1471-2148-6-3.
5
Mauve: multiple alignment of conserved genomic sequence with rearrangements.Mauve：带重排的保守基因组序列多重比对。
Genome Res. 2004 Jul;14(7):1394-403. doi: 10.1101/gr.2289704.
6
Vibrio rotiferianus sp. nov., isolated from cultures of the rotifer Brachionus plicatilis.新种罗非鱼弧菌，从褶皱臂尾轮虫培养物中分离得到。
Int J Syst Evol Microbiol. 2003 Jan;53(Pt 1):239-243. doi: 10.1099/ijs.0.02430-0.
7
Accessory cholera enterotoxin (Ace), the third toxin of a Vibrio cholerae virulence cassette.霍乱弧菌毒力盒的第三种毒素——辅助霍乱肠毒素（Ace）。
Proc Natl Acad Sci U S A. 1993 Jun 1;90(11):5267-71. doi: 10.1073/pnas.90.11.5267.
8
Vibrio cholerae produces a second enterotoxin, which affects intestinal tight junctions.霍乱弧菌产生第二种肠毒素，它会影响肠道紧密连接。
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9
Structural analysis of the acfA and acfD genes of Vibrio cholerae: effects of DNA topology and transcriptional activators on expression.霍乱弧菌acfA和acfD基因的结构分析：DNA拓扑结构和转录激活因子对表达的影响
J Bacteriol. 1992 Aug;174(16):5211-8. doi: 10.1128/jb.174.16.5211-5218.1992.
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