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采用多重分支 DNA 分析方法对麻风病进行基因表达分析。

Gene expression analysis of leprosy by using a multiplex branched DNA assay.

机构信息

Shandong Provincial Institute of Dermatology and Venereology, Provincial Academy of Medical Science, Jinan, Shandong, China.

出版信息

Exp Dermatol. 2011 Jun;20(6):520-2. doi: 10.1111/j.1600-0625.2011.01270.x.

DOI:10.1111/j.1600-0625.2011.01270.x
PMID:21585556
Abstract

Leprosy is caused by Mycobacterium leprae, and the global registered prevalence of leprosy at the beginning of 2009 stood at 213,036 cases. It has long been thought that leprosy has a strong genetic risk. Recently, we have identified significant associations (P < 1.00 × 10(-10)) between SNPs in the genes CCDC122, C13orf31, NOD2, TNFSF15, HLA-DR and RIPK2 and a trend towards an association (P = 5.10 × 10(-5)) with a SNP in LRRK2. Here, we investigated the expression of these seven genes in formalin-fixed, paraffin-embedded skin tissues of leprosy and matched normal tissues using branched DNA technology. This technology allows for direct measurement of targeted mRNA within cellular lysate using a 96-well plate format in a time frame compared to a reporter gene assay. The clear upregulation of all seven genes was found in leprosy tissues compared to normal tissues, which further supports our genome-wide association study results.

摘要

麻风病由麻风分枝杆菌引起,2009 年初全球登记的麻风病患病率为 213036 例。长期以来,人们一直认为麻风病具有很强的遗传风险。最近,我们已经确定了 CCDC122、C13orf31、NOD2、TNFSF15、HLA-DR 和 RIPK2 基因中的 SNP 与麻风病之间存在显著关联(P<1.00×10(-10)),并且与 LRRK2 中的 SNP 呈关联趋势(P=5.10×10(-5))。在这里,我们使用分枝 DNA 技术研究了福尔马林固定、石蜡包埋的麻风病皮肤组织和匹配的正常组织中这七个基因的表达情况。与报告基因检测相比,该技术允许在 96 孔板格式的细胞裂解物中直接测量靶向 mRNA,时间框架更短。与正常组织相比,麻风病组织中这七个基因均明显上调,这进一步支持了我们的全基因组关联研究结果。

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引用本文的文献

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Biomarkers for Detecting Resilience against Mycobacterial Disease in Animals.动物对分枝杆菌病的抗性的生物标志物。
Infect Immun. 2019 Dec 17;88(1). doi: 10.1128/IAI.00401-19.
3
Fine-mapping analysis revealed complex pleiotropic effect and tissue-specific regulatory mechanism of TNFSF15 in primary biliary cholangitis, Crohn's disease and leprosy.
精细映射分析揭示了 TNFSF15 在原发性胆汁性胆管炎、克罗恩病和麻风病中的复杂多效性作用和组织特异性调节机制。
Sci Rep. 2016 Aug 10;6:31429. doi: 10.1038/srep31429.
4
Expression of RAS-like family members, c-jun and c-myc mRNA levels in neoplastic hemocytes of soft-shell clams Mya arenaria using microsphere-based 8-plex branched DNA assay.使用基于微球的8重分支DNA分析法检测砂海螂肿瘤血细胞中RAS样家族成员、c-jun和c-myc mRNA水平。
Results Immunol. 2012 Apr 7;2:83-7. doi: 10.1016/j.rinim.2012.03.003. eCollection 2012.
5
LRRK2 and RIPK2 variants in the NOD 2-mediated signaling pathway are associated with susceptibility to Mycobacterium leprae in Indian populations.LRRK2 和 RIPK2 变异体在 NOD2 介导的信号通路中与印度人群中麻风分枝杆菌易感性相关。
PLoS One. 2013 Aug 28;8(8):e73103. doi: 10.1371/journal.pone.0073103. eCollection 2013.
6
Gene expression profiling specifies chemokine, mitochondrial and lipid metabolism signatures in leprosy.基因表达谱分析确定麻风病中的趋化因子、线粒体和脂质代谢特征。
PLoS One. 2013 Jun 14;8(6):e64748. doi: 10.1371/journal.pone.0064748. Print 2013.