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嗜热栖热菌 HB8 串联型普遍应激蛋白 TTHA0350 的晶体结构。

Crystal structure of the tandem-type universal stress protein TTHA0350 from Thermus thermophilus HB8.

机构信息

RIKEN SPring-8 Center, Harima Institute, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan.

出版信息

J Biochem. 2011 Sep;150(3):295-302. doi: 10.1093/jb/mvr057. Epub 2011 May 18.

Abstract

The genome sequence of an extremely thermophilic bacterium, Thermus thermophilus HB8, revealed that TTHA0350 is a tandem-type universal stress protein (Usp) consisting of two Usp domains. Usp proteins, which are characterized by a conserved domain consisting of 130-160 amino acids, are inducibly expressed under a large number of stress conditions. The N-terminal domain of TTHA0350 contains a motif similar to the consensus ATP-binding one (G-2 x-G-9x-G-(S/T)), but the C-terminal one seems to lack the consensus motif. In order to determine its structural properties, we determined the crystal structures of TTHA0350 in the unliganded form and TTHA0350•2ATP at 2.50 and 1.70 Å resolution, respectively. This is the first structure determination of a Usp family protein in both unliganded and ATP-liganded forms. TTHA0350 is folded into a fan-shaped structure which is similar to that of tandem-type Usp protein Rv2623 from Mycobacterium tuberculosis. However, the dimer assembly with C2-symmetry in TTHA0350 is quite different from that with D2-symmetry in Rv2623. The X-ray structure showed that not only the N-terminal but also the C-terminal domain binds one ATP, although the ATP-binding motif could not be detected in the C-terminal domain. The loop interacting with ATP in the C-terminal domain is in a conformation quite different from that in the N-terminal domain.

摘要

极端嗜热菌 Thermus thermophilus HB8 的基因组序列表明,TTHA0350 是一种串联型普遍应激蛋白 (Usp),由两个 Usp 结构域组成。Usp 蛋白的特征是含有一个保守结构域,由 130-160 个氨基酸组成,可在多种应激条件下诱导表达。TTHA0350 的 N 端结构域含有与共识 ATP 结合基序(G-2 x-G-9x-G-(S/T))相似的基序,但 C 端结构域似乎缺乏共识基序。为了确定其结构特性,我们分别以 2.50 和 1.70 Å 的分辨率测定了无配体形式和 TTHA0350•2ATP 形式的 TTHA0350 的晶体结构。这是首次在无配体和 ATP 配体形式下确定 Usp 家族蛋白的结构。TTHA0350 折叠成扇形结构,与结核分枝杆菌的串联型 Usp 蛋白 Rv2623 相似。然而,TTHA0350 中具有 C2 对称性的二聚体组装与 Rv2623 中具有 D2 对称性的二聚体组装完全不同。X 射线结构表明,不仅 N 端结构域,而且 C 端结构域都结合一个 ATP,尽管在 C 端结构域中无法检测到 ATP 结合基序。与 C 端结构域中 ATP 相互作用的环处于与 N 端结构域中完全不同的构象。

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