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古粪便毛发轴中的袋狼 DNA 序列。

Mylodon darwinii DNA sequences from ancient fecal hair shafts.

机构信息

McMaster Ancient DNA Center, McMaster University, Hamilton, ON, Canada.

出版信息

Ann Anat. 2012 Jan 20;194(1):26-30. doi: 10.1016/j.aanat.2011.05.001. Epub 2011 May 17.

Abstract

Preserved hair has been increasingly used as an ancient DNA source in high throughput sequencing endeavors, and it may actually offer several advantages compared to more traditional ancient DNA substrates like bone. However, cold environments have yielded the most informative ancient hair specimens, while its preservation, and thus utility, in temperate regions is not well documented. Coprolites could represent a previously underutilized preservation substrate for hairs, which, if present therein, represent macroscopic packages of specific cells that are relatively simple to separate, clean and process. In this pilot study, we report amplicons 147-152 base pairs in length (w/primers) from hair shafts preserved in a south Chilean coprolite attributed to Darwin's extinct ground sloth, Mylodon darwinii. Our results suggest that hairs preserved in coprolites from temperate cave environments can serve as an effective source of ancient DNA. This bodes well for potential molecular-based population and phylogeographic studies on sloths, several species of which have been understudied despite leaving numerous coprolites in caves across of the Americas.

摘要

毛发已被越来越多地用作高通量测序中古老 DNA 的来源,与骨骼等更传统的古老 DNA 基质相比,它实际上可能具有几个优势。然而,寒冷的环境产生了最具信息量的古代毛发标本,而毛发在温带地区的保存及其因此的实用性却没有得到很好的记录。粪化石可能代表了毛发以前未被充分利用的保存基质,如果存在于其中,则代表了相对容易分离、清洁和处理的特定细胞的宏观包装。在这项初步研究中,我们报告了从保存在智利南部粪化石中的毛发轴上获得的 147-152 个碱基对长的扩增子(带引物),这些粪化石归因于达尔文已灭绝的大地懒 Mylodon darwinii。我们的结果表明,保存在温带洞穴环境中的粪化石中的毛发可以作为古老 DNA 的有效来源。这对于树懒的潜在分子基础种群和系统地理学研究来说是个好兆头,尽管美洲各地的洞穴中留下了许多粪化石,但仍有几个树懒物种研究不足。

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