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解析组氨酸 252 在分枝杆菌腺苷 5'-磷酸硫酸(APS)还原酶催化中的作用。

Deciphering the role of histidine 252 in mycobacterial adenosine 5'-phosphosulfate (APS) reductase catalysis.

机构信息

Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA.

出版信息

J Biol Chem. 2011 Aug 12;286(32):28567-73. doi: 10.1074/jbc.M111.238998. Epub 2011 Jun 14.

DOI:10.1074/jbc.M111.238998
PMID:21673113
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3151098/
Abstract

Mycobacterium tuberculosis adenosine 5'-phosphosulfate reductase (APR) catalyzes the first committed step in sulfate reduction for the biosynthesis of cysteine and is essential for survival in the latent phase of tuberculosis infection. The reaction catalyzed by APR involves the nucleophilic attack by conserved Cys-249 on adenosine 5'-phosphosulfate, resulting in a covalent S-sulfocysteine intermediate that is reduced in subsequent steps by thioredoxin to yield the sulfite product. Cys-249 resides on a mobile active site lid at the C terminus, within a K(R/T)ECG(L/I)H motif. Owing to its strict conservation among sulfonucleotide reductases and its proximity to the active site cysteine, it has been suggested that His-252 plays a key role in APR catalysis, specifically as a general base to deprotonate Cys-249. Using site-directed mutagenesis, we have changed His-252 to an alanine residue and analyzed the effect of this mutation on the kinetic parameters, pH rate profile, and ionization of Cys-249 of APR. Interestingly, our data demonstrate that His-252 does not perturb the pK(a) of Cys-249 or play a direct role in rate-limiting chemical steps of the reaction. Rather, we show that His-252 enhances substrate affinity via interaction with the α-phosphate and the endocyclic ribose oxygen. These findings were further supported by isothermal titration calorimetry to provide a thermodynamic profile of ligand-protein interactions. From an applied standpoint, our study suggests that small-molecules targeting residues in the dynamic C-terminal segment, particularly His-252, may lead to inhibitors with improved binding affinity.

摘要

结核分枝杆菌腺苷 5'-磷酸硫酸还原酶(APR)催化硫酸盐还原的第一步,用于半胱氨酸的生物合成,对于结核分枝杆菌感染潜伏阶段的生存至关重要。APR 催化的反应涉及保守的 Cys-249 对腺苷 5'-磷酸硫酸的亲核攻击,导致形成半胱氨酸-S-磺酸中间产物,该中间产物在随后的步骤中被硫氧还蛋白还原为亚硫酸盐产物。Cys-249 位于 C 末端的可移动活性位点盖内,位于 K(R/T)ECG(L/I)H 基序内。由于其在硫酸核苷酸还原酶中的严格保守性及其靠近活性位点半胱氨酸,有人提出 His-252 在 APR 催化中起关键作用,特别是作为脱质子化 Cys-249 的广义碱。使用定点突变,我们将 His-252 突变为丙氨酸残基,并分析了该突变对 APR 的动力学参数、pH 速率曲线和 Cys-249 离解的影响。有趣的是,我们的数据表明 His-252 不会干扰 Cys-249 的 pK(a),也不会直接参与反应的限速化学步骤。相反,我们表明 His-252 通过与 α-磷酸和环内核糖氧相互作用增强了底物亲和力。等温滴定量热法进一步支持了这些发现,提供了配体-蛋白相互作用的热力学图谱。从应用的角度来看,我们的研究表明,针对动态 C 末端片段中残基的小分子,特别是 His-252,可能会导致结合亲和力提高的抑制剂。

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