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高温增强了热稳定纤维素酶 CBM 和催化结构域之间的协同运动:来自本征动力学的机制见解。

High temperatures enhance cooperative motions between CBM and catalytic domains of a thermostable cellulase: mechanism insights from essential dynamics.

机构信息

Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Rio de Janeiro, 21941-902, Brazil.

出版信息

Phys Chem Chem Phys. 2011 Aug 14;13(30):13709-20. doi: 10.1039/c0cp02697b. Epub 2011 Jun 29.

DOI:10.1039/c0cp02697b
PMID:21713261
Abstract

Cellulases from thermophiles are capable of cleaving sugar chains from cellulose efficiently at high temperatures. The thermo-resistant Cel9A-68 cellulase possesses two important domains: CBM and a catalytic domain connected by a Pro/Ser/Thr rich linker. These domains act cooperatively to allow efficient catalysis. Despite exhaustive efforts to characterize cellulase binding and mechanism of action, a detailed description of the cellulose intrinsic flexibility is still lacking. From computational simulations we studied the temperature influence on the enzyme plasticity, prior to substrate binding. Interestingly, we observed an enhancement of collective motions at high temperatures. These motions are the most representative and describe an intrinsic hinge bending transition. A detailed analysis of these motions revealed an interdomain approximation where D459 and G460, located at the linker region, are the hinge residues. Therefore, we propose a new putative site for mutagenesis targeting the modulation of such conformational transition that may be crucial for activity.

摘要

嗜热菌来源的纤维素酶能够在高温下有效地从纤维素中切割糖链。耐热 Cel9A-68 纤维素酶具有两个重要结构域:CBM 和通过富含 Pro/Ser/Thr 的连接子连接的催化结构域。这些结构域协同作用,以实现有效的催化。尽管人们已经做出了巨大的努力来描述纤维素酶的结合和作用机制,但对于纤维素内在的灵活性仍缺乏详细的描述。通过计算模拟,我们研究了在结合底物之前,温度对酶塑性的影响。有趣的是,我们观察到在高温下集体运动增强。这些运动是最具代表性的,描述了一个内在的铰链弯曲转变。对这些运动的详细分析揭示了结构域之间的近似,其中位于连接子区域的 D459 和 G460 是铰链残基。因此,我们提出了一个新的可能的突变靶点,用于靶向这种构象转变的调节,这可能对活性至关重要。

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