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自旋轨道耦合在预测 V(IV) O2+ 物种的 51V 超精细耦合常数中重要吗?ORCA 与 Gaussian 的性能比较及生物应用。

Is the spin-orbit coupling important in the prediction of the 51V hyperfine coupling constants of V(IV) O2+ species? ORCA versus Gaussian performance and biological applications.

机构信息

Dipartimento di Chimica e Centro Interdisciplinare per lo Sviluppo della Ricerca Biotecnologica e per lo Studio della Biodiversità della Sardegna, Università di Sassari, Via Vienna 2, I-07100 Sassari, Italy.

出版信息

J Comput Chem. 2011 Oct;32(13):2822-35. doi: 10.1002/jcc.21862. Epub 2011 Jul 6.

DOI:10.1002/jcc.21862
PMID:21735449
Abstract

Density functional theory calculations of the (51)V hyperfine coupling (HFC) tensor A, have been completed for eighteen V(IV)O(2+) complexes with different donor set, electric charge and coordination geometry. A tensor was calculated with ORCA software with several functionals and basis sets taking into account the spin-orbit coupling contribution. The results were compared with those obtained with Gaussian 03 software using the half-and-half functional BHandHLYP and 6-311g(d,p) basis set. The order of accuracy of the functionals in the prediction of A(iso), A(z) and dipolar term A(z,anis) is BHandHLYP > PBE0 >> B3PW > TPSSh >> B3LYP >> BP86 > VWN5 (for A(iso)), BHandHLYP > PBE0 >> B3PW > TPSSh > B3LYP >> BP86 > VWN5 (for A(z)), B3LYP > PBE0 ∼ B3PW ∼ BHandHLYP >> TPSSh > BP86 ∼ VWN5 (for A(z,anis)). The good agreement in the prediction of A(z) with BHandHLYP is due to a compensation between the overestimation of A(iso) and underestimation of A(z,anis) (A(z) = A(iso) + A(z,anis)), whereas among the hybrid functionals PBE0 performs better than the other ones. BHandHLYP functional and Gaussian software are recommended when the V(IV)O(2+) species contains only V-O and/or V-N bonds, whereas PBE0 functional and ORCA software for V(IV)O(2+) complexes with one or more V-S bonds. Finally, the application of these methods to the coordination environment of V(IV)O(2+) ion in V-proteins, like vanadyl-substituted insulin, carbonic anhydrase, collagen and S-adenosylmethionine synthetase, was discussed.

摘要

对具有不同供体、电荷和配位几何形状的 18 种 V(IV)O(2+)配合物的 (51)V 超精细耦合张量 A 进行了密度泛函理论计算。在考虑自旋轨道耦合贡献的情况下,使用 ORCA 软件和几种功能和基组计算了张量。结果与使用 Gaussian 03 软件,采用半半功能 BHandHLYP 和 6-311g(d,p)基组得到的结果进行了比较。在预测 A(iso)、A(z)和偶极项 A(z,anis)方面,功能的精度顺序为 BHandHLYP > PBE0 >> B3PW > TPSSh >> B3LYP >> BP86 > VWN5(对于 A(iso)),BHandHLYP > PBE0 >> B3PW > TPSSh > B3LYP >> BP86 > VWN5(对于 A(z)),B3LYP > PBE0∼B3PW∼BHandHLYP >> TPSSh > BP86∼VWN5(对于 A(z,anis))。BHandHLYP 在预测 A(z)方面的良好一致性归因于 A(iso)的高估和 A(z,anis)的低估之间的补偿(A(z) = A(iso) + A(z,anis)),而在混合功能中,PBE0 比其他功能表现更好。当 V(IV)O(2+)物种仅包含 V-O 和/或 V-N 键时,推荐使用 BHandHLYP 功能和 Gaussian 软件,而当 V(IV)O(2+)配合物具有一个或多个 V-S 键时,推荐使用 PBE0 功能和 ORCA 软件。最后,讨论了这些方法在 V(IV)O(2+)离子在 V-蛋白中的配位环境中的应用,如钒取代胰岛素、碳酸酐酶、胶原蛋白和 S-腺苷甲硫氨酸合成酶。

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