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静电作用对 DNA 凝聚的贡献——在强库仑耦合条件下简单模型中“能量最小化”的应用。

Electrostatic contribution to DNA condensation--application of 'energy minimization' in a simple model in the strong Coulomb coupling regime.

机构信息

Department of Physics, Chancellor College, University of Malawi, Box 280, Zomba, Malawi.

出版信息

J Phys Condens Matter. 2011 Aug 17;23(32):325102. doi: 10.1088/0953-8984/23/32/325102. Epub 2011 Jul 11.

Abstract

The process of bending of straight DNA to a circular form in the presence of any of the mono-, di-, tri- or tetravalent counterions has been simulated in a strong Coulomb coupling environment, employing a previously developed energy minimization simulation technique. The inherent characteristics of the simulation technique allow the monitoring of the required electrostatic contribution to the bending. The curvature of the bending has been found to play a crucial role in facilitating the electrostatic attractive potential energy. The total electrostatic potential energy has been found to decrease with bending, which indicates that bending straight DNA to a circular form or to a toroidal form in the presence of neutralizing counterions is energetically favourable and is practically a spontaneous phenomenon.

摘要

在单、双、三或四价抗衡离子存在的情况下,将直线 DNA 弯曲成圆形的过程已经在强库仑耦合环境中通过先前开发的能量最小化模拟技术进行了模拟。模拟技术的固有特性允许监测对弯曲所需的静电贡献。已经发现弯曲的曲率在促进静电吸引力势能方面起着至关重要的作用。总静电势能随着弯曲而减小,这表明在中和抗衡离子的存在下,将直线 DNA 弯曲成圆形或环形是能量有利的,并且实际上是一种自发现象。

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