Taxonomy and Evolutionary Biology, Leibniz Institute of Plant Genetics and Crop Research (IPK), Gatersleben, Germany.
Genome. 2011 Jul;54(7):575-85. doi: 10.1139/g11-021. Epub 2011 Jul 11.
In this study, we report genome size variations in Corchorus olitorius L. (Malvaceae s.l.), a crop species known for its morphological plasticity and broad geographical distribution, and Corchorus capsularis L., the second widely cultivated species in the genus. Flow cytometric analyses were conducted with several tissues and nuclei isolation buffers using 69 accessions of C. olitorius and 4 accessions of C. capsularis, representing different habitats and geographical origins. The mean 2C nuclear DNA content (± SD) of C. olitorius was estimated to be 0.918 ± 0.011 pg, with a minimum of 0.882 ± 0.004 pg, and a maximum of 0.942 ± 0.004 pg. All studied plant materials were found to be diploid with 2n = 14. The genome size is negatively correlated with days to flowering (r = -0.29, p < 0.05) and positively with seed surface area (r = 0.38, p < 0.05). Moreover, a statistically significant positive correlation was detected between genome size and growing elevation (r = 0.59, p < 0.001) in wild populations. The mean 2C nuclear DNA content of C. capsularis was estimated to be 0.802 ± 0.008 pg. In comparison to other economically important crop species, the genome sizes of C. olitorius and C. capsularis are much smaller, and therewith closer to that of rice. The relatively small genome sizes will be of general advantage for any efforts into genomics or sequencing approaches of these species.
在这项研究中,我们报告了荠蓝(锦葵科)和黄花草木樨(锦葵科)基因组大小的变化。荠蓝是一种以形态可塑性和广泛的地理分布而闻名的作物,黄花草木樨是该属中第二个广泛种植的物种。我们使用 69 个荠蓝品种和 4 个黄花草木樨品种的几种组织和核分离缓冲液进行了流式细胞分析,这些品种代表了不同的生境和地理起源。荠蓝的平均 2C 核 DNA 含量(±SD)估计为 0.918 ± 0.011 pg,最小值为 0.882 ± 0.004 pg,最大值为 0.942 ± 0.004 pg。所有研究的植物材料均被发现为二倍体,具有 2n = 14。基因组大小与开花天数(r = -0.29,p < 0.05)呈负相关,与种子表面积呈正相关(r = 0.38,p < 0.05)。此外,在野生种群中,还检测到基因组大小与生长海拔(r = 0.59,p < 0.001)之间存在统计学上显著的正相关。黄花草木樨的平均 2C 核 DNA 含量估计为 0.802 ± 0.008 pg。与其他经济上重要的作物物种相比,荠蓝和黄花草木樨的基因组大小要小得多,与水稻的基因组大小更为接近。相对较小的基因组大小将对这些物种的基因组学或测序方法的任何努力都具有普遍优势。