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高通量基因组测序分析一株产 NDM-1 多药耐药大肠杆菌的耐药组。

Analysis of the resistome of a multidrug-resistant NDM-1-producing Escherichia coli strain by high-throughput genome sequencing.

机构信息

Service de Bactériologie-Virologie, Hôpital de Bicêtre, 78 rue du Général Leclerc, 94275 Le Kremlin-Bicêtre cedex, France.

出版信息

Antimicrob Agents Chemother. 2011 Sep;55(9):4224-9. doi: 10.1128/AAC.00165-11. Epub 2011 Jul 11.

Abstract

The resistome of the multidrug-resistant Escherichia coli strain 271 carrying the plasmid-mediated bla(NDM-1) carbapenemase gene was analyzed by high-throughput genome sequencing. The p271A plasmid carrying the bla(NDM-1) gene was 35.9 kb in size and possessed an IncN-type backbone that harbored a novel replicase gene. Acquisition of the bla(NDM-1) gene on plasmid p271A had been likely the result of a cointegration event involving the transposase of Tn5403. The expression of bla(NDM-1) was associated with the insertion sequence ISAba125 likely originating from Acinetobacter baumannii. E. coli 271 accumulated multiple resistance determinants, including five β-lactamase genes (comprising the extended-spectrum β-lactamase CTX-M-15), two 16S RNA methylase ArmA- and RmtB-encoding genes, and the qepA gene encoding an efflux pump involved in resistance to fluoroquinolones. These resistance genes were located on three additional plasmids, of 160 kb (IncA/C), 130 kb (IncF), and 110 kb (IncI1). In addition, several chromosomally encoded resistance determinants were identified, such as topoisomerase mutations, porin modifications and truncations, and the intrinsic ampC gene of E. coli that was weakly expressed. The multidrug resistance pattern observed for E. coli 271 was therefore the result of combined chromosome- and plasmid-encoded mechanisms.

摘要

通过高通量基因组测序分析了携带质粒介导 bla(NDM-1)碳青霉烯酶基因的多药耐药大肠杆菌 271 株的耐药组。携带 bla(NDM-1)基因的 p271A 质粒大小为 35.9kb,具有 IncN 型骨架,其中包含一个新型复制酶基因。p271A 质粒上 bla(NDM-1)基因的获得可能是转座酶 Tn5403 参与的共整合事件的结果。bla(NDM-1)的表达与可能源自鲍曼不动杆菌的插入序列 ISAba125 相关。大肠杆菌 271 积累了多种耐药决定因子,包括五个β-内酰胺酶基因(包括扩展谱β-内酰胺酶 CTX-M-15)、两个 16S RNA 甲基酶 ArmA 和 RmtB 编码基因,以及编码与氟喹诺酮类药物耐药相关的外排泵 qepA 基因。这些耐药基因位于另外三个质粒上,大小分别为 160kb(IncA/C)、130kb(IncF)和 110kb(IncI1)。此外,还鉴定了几个染色体编码的耐药决定因子,如拓扑异构酶突变、孔蛋白修饰和截断以及大肠杆菌固有的弱表达 ampC 基因。因此,观察到的大肠杆菌 271 的多药耐药模式是染色体和质粒编码机制共同作用的结果。

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