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生成HIV-1和内控转录本作为内部定量竞争性逆转录-聚合酶链反应检测法测定HIV-1病毒载量的标准品。

Generation of HIV-1 and Internal Control Transcripts as Standards for an In-House Quantitative Competitive RT-PCR Assay to Determine HIV-1 Viral Load.

作者信息

Armas Cayarga Anny, Perea Hernández Yenitse, González González Yaimé J, Dueñas Carrera Santiago, González Pérez Idania, Robaina Álvarez René

机构信息

Molecular Biology Department, Centro de InmunoEnsayo (CIE), Calle 134 y Avenida 25 Playa, Apartado Postal 6653, Ciudad de la Habana, CP 11600, Cuba.

出版信息

Biotechnol Res Int. 2011;2011:964831. doi: 10.4061/2011/964831. Epub 2011 Jun 23.

Abstract

Human immunodeficiency virus type-1 (HIV-1) viral load is useful for monitoring disease progression in HIV-infected individuals. We generated RNA standards of HIV-1 and internal control (IC) by in vitro transcription and evaluated its performance in a quantitative reverse transcription polymerase chain reaction (qRT-PCR) assay. HIV-1 and IC standards were obtained at high RNA concentrations, without DNA contamination. When these transcripts were included as standards in a qRT-PCR assay, it was obtained a good accuracy (±0.5 log(10) unit of the expected results) in the quantification of the HIV-1 RNA international standard and controls. The lower limit detection achieved using these standards was 511.0 IU/mL. A high correlation (r = 0.925) was obtained between the in-house qRT-PCR assay and the NucliSens easyQ HIV-1 test (bioMerieux) for HIV-1 RNA quantitation with clinical samples (N = 14). HIV-1 and IC RNA transcripts, generated in this study, proved to be useful as standards in an in-house qRT-PCR assay for determination of HIV-1 viral load.

摘要

1型人类免疫缺陷病毒(HIV-1)载量对于监测HIV感染个体的疾病进展很有用。我们通过体外转录生成了HIV-1和内对照(IC)的RNA标准品,并在定量逆转录聚合酶链反应(qRT-PCR)测定中评估了其性能。HIV-1和IC标准品在高RNA浓度下获得,无DNA污染。当将这些转录本作为标准品纳入qRT-PCR测定时,在HIV-1 RNA国际标准品和对照品的定量中获得了良好的准确性(±0.5 log(10)个预期结果单位)。使用这些标准品实现的检测下限为511.0 IU/mL。对于临床样本(N = 14)的HIV-1 RNA定量,内部qRT-PCR测定与NucliSens easyQ HIV-1检测(生物梅里埃公司)之间获得了高度相关性(r = 0.925)。本研究中生成的HIV-1和IC RNA转录本被证明可作为内部qRT-PCR测定中用于测定HIV-1病毒载量的标准品。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca99/3135052/98e3905b41e9/BTRI2011-964831.001.jpg

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