Department of Physics and Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
Nucleic Acids Res. 2011 Nov 1;39(20):8833-43. doi: 10.1093/nar/gkr561. Epub 2011 Jul 18.
The RecA protein is an ATPase that mediates recombination via strand exchange. In strand exchange a single-stranded DNA (ssDNA) bound to RecA binding site I in a RecA/ssDNA filament pairs with one strand of a double-stranded DNA (dsDNA) and forms heteroduplex dsDNA in site I if homology is encountered. Long sequences are exchanged in a dynamic process in which initially unbound dsDNA binds to the leading end of a RecA/ssDNA filament, while heteroduplex dsDNA unbinds from the lagging end via ATP hydrolysis. ATP hydrolysis is required to convert the active RecA conformation, which cannot unbind, to the inactive conformation, which can unbind. If dsDNA extension due to RecA binding increases the dsDNA tension, then RecA unbinding must decrease tension. We show that in the presence of ATP hydrolysis decreases in tension induce decreases in length whereas in the absence of hydrolysis, changes in tension have no systematic effect. These results suggest that decreases in force enhance dissociation by promoting transitions from the active to the inactive RecA conformation. In contrast, increases in tension reduce dissociation. Thus, the changes in tension inherent to strand exchange may couple with ATP hydrolysis to increase the directionality and stringency of strand exchange.
RecA 蛋白是一种 ATP 酶,通过链交换介导重组。在链交换中,与 RecA 结合位点 I 结合的单链 DNA(ssDNA)与双链 DNA(dsDNA)的一条链配对,如果遇到同源性,则在 I 位点形成异源双链 dsDNA。长序列通过一个动态过程进行交换,在该过程中,最初未结合的 dsDNA 结合到 RecA/ssDNA 丝的前端,而异源双链 dsDNA 通过 ATP 水解从后端解链。ATP 水解是将不能解链的活性 RecA 构象转换为可以解链的非活性构象所必需的。如果由于 RecA 结合导致 dsDNA 延伸增加 dsDNA 的张力,则 RecA 解链必须降低张力。我们表明,在 ATP 水解存在的情况下,张力的降低会导致长度的降低,而在没有水解的情况下,张力的变化没有系统的影响。这些结果表明,力的降低通过促进从活性到非活性 RecA 构象的转变来增强解离。相反,张力的增加会减少解离。因此,链交换固有的张力变化可能与 ATP 水解偶联,以增加链交换的方向性和严格性。