Behavioral Ecology and Sociobiology Unit, German Primate Center, Kellnerweg 4, 37077 Göttingen, Germany.
BMC Evol Biol. 2011 Jul 21;11:216. doi: 10.1186/1471-2148-11-216.
Although most taxonomists agree that species are independently evolving metapopulation lineages that should be delimited with several kinds of data, the taxonomic practice in Malagasy primates (Lemuriformes) looks quite different. Several recently described lemur species are based solely on evidence of genetic distance and diagnostic characters of mitochondrial DNA sequences sampled from a few individuals per location. Here we explore the validity of this procedure for species delimitation in lemurs using published sequence data.
We show that genetic distance estimates and Population Aggregation Analysis (PAA) are inappropriate for species delimitation in this group of primates. Intra- and interspecific genetic distances overlapped in 14 of 17 cases independent of the genetic marker used. A simulation of a fictive taxonomic study indicated that for the mitochondrial D-loop the minimum required number of individuals sampled per location is 10 in order to avoid false positives via PAA.
Genetic distances estimates and PAA alone should not be used for species delimitation in lemurs. Instead, several nuclear and sex-specific loci should be considered and combined with other data sets from morphology, ecology or behavior. Independent of the data source, sampling should be done in a way to ensure a quantitative comparison of intra- and interspecific variation of the taxa in question. The results of our study also indicate that several of the recently described lemur species should be reevaluated with additional data and that the number of good species among the currently known taxa is probably lower than currently assumed.
尽管大多数分类学家都认为物种是独立进化的,应该用多种数据来界定它们的种群,但马达加斯加灵长类动物(灵长目)的分类实践却大不相同。最近描述的几种狐猴物种仅基于遗传距离的证据和从每个地点的少数个体中采样的线粒体 DNA 序列的诊断特征。在这里,我们使用已发表的序列数据来探讨这种方法在狐猴物种界定中的有效性。
我们表明,遗传距离估计和种群聚集分析(PAA)不适用于该组灵长类动物的物种界定。在 17 个案例中有 14 个案例中,无论使用何种遗传标记,种内和种间的遗传距离都存在重叠。一项虚构的分类学研究的模拟表明,对于线粒体 D 环,为了避免通过 PAA 产生假阳性,每个地点采样的个体数至少应为 10。
遗传距离估计和 PAA 不应单独用于狐猴的物种界定。相反,应该考虑几个核和性特异性基因座,并将其与来自形态学、生态学或行为的其他数据集相结合。无论数据源如何,采样方式都应确保对所讨论分类群的种内和种间变异进行定量比较。我们的研究结果还表明,最近描述的几种狐猴物种应结合其他数据进行重新评估,而且目前已知分类群中的良好物种数量可能低于目前的假设。