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韩国囊性纤维化患者中CFTR基因突变的异质性谱。

Heterogeneous spectrum of CFTR gene mutations in Korean patients with cystic fibrosis.

作者信息

Jung Haiyoung, Ki Chang-Seok, Koh Won-Jung, Ahn Kang-Mo, Lee Sang-Il, Kim Jeong-Ho, Ko Jae Sung, Seo Jeong Kee, Cha Seung-Ick, Lee Eun-Sil, Kim Jong-Won

机构信息

Department of Laboratory Medicine & Genetics, Samsung Medical Center and Sungkyunkwan University School of Medicine, Seoul, Korea.

出版信息

Korean J Lab Med. 2011 Jul;31(3):219-24. doi: 10.3343/kjlm.2011.31.3.219. Epub 2011 Jun 28.

DOI:10.3343/kjlm.2011.31.3.219
PMID:21779199
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3129356/
Abstract

BACKGROUND

Cystic fibrosis (CF) is one of the most common hereditary disorders among Caucasians. The most common mutations of the cystic fibrosis transmembrane conductance regulator (CFTR) gene have been well established among Caucasian populations. In Koreans, however, there are very few cases of genetically confirmed CF thus far, and the spectrum of mutations seems quite different from that observed in Caucasians.

METHODS

In the present study, we describe the cases of 2 Korean CF patients, present sequencing results identifying mutations in their CFTR gene, and summarize the results of CFTR mutational spectrum from previously reported Korean CF patients. The mutations described were identified by performing direct sequencing analysis of the complete coding regions and flanking intronic sequences of the CFTR gene, followed by multiplex ligation-dependent probe amplification (MLPA) analysis in order to detect gene deletions or duplications that could not be identified by a direct sequencing method.

RESULTS

Three CFTR mutations were identified in the 2 patients, including p.Q98R, c.2052delA, and c.579+5G>A. In an analysis of 9 Korean CF patients that included the 2 patients presented in this study, p.Q98R mutation was the only recurrently observed mutation with a frequency of 18.8% (3/16 alleles). Furthermore, only one of the mutations (c.3272-26A>G) was found among the 32 common mutations in the screening panel for Caucasians from the Cystic Fibrosis Mutation Database.

CONCLUSIONS

Sequencing of the entire CFTR gene followed by MLPA analysis, rather than using the targeted sequencing-based screening panel for mutations commonly found in Caucasian populations, is recommended for genetic analysis of Korean CF patients.

摘要

背景

囊性纤维化(CF)是白种人中最常见的遗传性疾病之一。囊性纤维化跨膜传导调节因子(CFTR)基因的最常见突变在白种人群体中已得到充分证实。然而,在韩国人中,迄今为止基因确诊的CF病例非常少,而且突变谱似乎与白种人中观察到的有很大不同。

方法

在本研究中,我们描述了2例韩国CF患者的病例,展示了鉴定其CFTR基因中突变的测序结果,并总结了先前报道的韩国CF患者的CFTR突变谱结果。通过对CFTR基因的完整编码区和侧翼内含子序列进行直接测序分析,随后进行多重连接依赖探针扩增(MLPA)分析,以检测直接测序方法无法鉴定的基因缺失或重复,从而鉴定出所描述的突变。

结果

在这2例患者中鉴定出3种CFTR突变,包括p.Q98R、c.2052delA和c.579+5G>A。在对包括本研究中呈现的2例患者在内的9例韩国CF患者的分析中,p.Q98R突变是唯一反复观察到的突变,频率为18.8%(3/16个等位基因)。此外,在囊性纤维化突变数据库中白种人的筛查面板的32种常见突变中,仅发现了其中一种突变(c.3272-26A>G)。

结论

对于韩国CF患者的基因分析,建议对整个CFTR基因进行测序,随后进行MLPA分析,而不是使用针对白种人群体中常见突变的基于靶向测序的筛查面板。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0aa1/3129356/4d8af06b4c72/kjlm-31-219-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0aa1/3129356/4d8af06b4c72/kjlm-31-219-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0aa1/3129356/4d8af06b4c72/kjlm-31-219-g001.jpg

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