Du Ren-Qian, Jin Li, Zhang Feng
MOE Key Laboratory of Contemporary Anthropology, School of Life Sciences, Fudan University, Shanghai 200433, China.
Yi Chuan. 2011 Aug;33(8):857-69. doi: 10.3724/sp.j.1005.2011.00857.
Copy number variation (CNV) is the main type of structure variation (SV) caused by genomic rearrangement, which mainly includes deletion and duplication of sub-microscopic but large (>1 kb) genomic segments. CNV has been recognized as one of the main genetic factors underlying human diseases. The mutation rate (per locus) of CNV is much higher than that of single nucleotide polymorphism (SNP). The genome-wide assays for CNV study include array-based comparative genomic hybridization (aCGH), SNP genotyping microarrays, and next-generation sequencing techniques. Various molecular mechanisms are involved in CNV formation, which can be divided into two main categories, DNA recombination-based and DNA replication-based mechanisms. CNVs can be associated with Mendelian diseases, sporadic diseases, and susceptibility to complex diseases. CNVs can convey clinical phenotypes by gene dosage, gene disruption, gene fusion, and position effects. Further studies on CNVs will shed new light on human genome structure, genetic variations between individuals, and missing heritability of human diseases.
拷贝数变异(CNV)是由基因组重排引起的主要结构变异(SV)类型,主要包括亚微观但较大(>1 kb)基因组片段的缺失和重复。CNV已被认为是人类疾病的主要遗传因素之一。CNV的(每个位点)突变率远高于单核苷酸多态性(SNP)。用于CNV研究的全基因组分析方法包括基于芯片的比较基因组杂交(aCGH)、SNP基因分型芯片和新一代测序技术。多种分子机制参与CNV的形成,可分为两大类,即基于DNA重组的机制和基于DNA复制的机制。CNV可与孟德尔疾病、散发性疾病以及复杂疾病易感性相关。CNV可通过基因剂量、基因破坏、基因融合和位置效应传递临床表型。对CNV的进一步研究将为人类基因组结构、个体间遗传变异以及人类疾病的遗传力缺失提供新的线索。