• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

组合生成的 6-氟喹诺酮类似物文库作为新型抗结核药物的潜力:化学计量学和分子建模评估。

Combinatorially-generated library of 6-fluoroquinolone analogs as potential novel antitubercular agents: a chemometric and molecular modeling assessment.

机构信息

National Institute of Chemistry, Ljubljana, Slovenia.

出版信息

J Mol Model. 2012 May;18(5):1735-53. doi: 10.1007/s00894-011-1179-0. Epub 2011 Aug 12.

DOI:10.1007/s00894-011-1179-0
PMID:21833830
Abstract

The virtual combinatorial chemistry approach as a methodology for generating chemical libraries of structurally-similar analogs in a virtual environment was employed for building a general mixed virtual combinatorial library with a total of 53.871 6-FQ structural analogs, introducing the real synthetic pathways of three well known 6-FQ inhibitors. The druggability properties of the generated combinatorial 6-FQs were assessed using an in-house developed drug-likeness filter integrating the Lipinski/Veber rule-sets. The compounds recognized as drug-like were used as an external set for prediction of the biological activity values using a neural-networks (NN) model based on an experimentally-determined set of active 6-FQs. Furthermore, a subset of compounds was extracted from the pool of drug-like 6-FQs, with predicted biological activity, and subsequently used in virtual screening (VS) campaign combining pharmacophore modeling and molecular docking studies. This complex scheme, a powerful combination of chemometric and molecular modeling approaches provided novel QSAR guidelines that could aid in the further lead development of 6-FQs agents.

摘要

采用虚拟组合化学方法作为在虚拟环境中生成结构相似类似物的化学文库的方法,构建了一个包含总共 53871 个 6-FQ 结构类似物的通用混合虚拟组合文库,引入了三种已知 6-FQ 抑制剂的真实合成途径。使用内部开发的药物相似性过滤器,集成了 Lipinski/Veber 规则集,评估了生成的组合 6-FQ 的可药性特性。将被识别为具有药物样性质的化合物用作基于实验确定的一组活性 6-FQ 的神经网络 (NN) 模型预测生物活性值的外部集。此外,从具有预测生物活性的药物样 6-FQ 池中提取了一组化合物,随后在结合药效团建模和分子对接研究的虚拟筛选 (VS) 活动中使用。这种复杂的方案是化学计量学和分子建模方法的强大组合,提供了新的 QSAR 指导方针,可帮助进一步开发 6-FQ 药物先导化合物。

相似文献

1
Combinatorially-generated library of 6-fluoroquinolone analogs as potential novel antitubercular agents: a chemometric and molecular modeling assessment.组合生成的 6-氟喹诺酮类似物文库作为新型抗结核药物的潜力:化学计量学和分子建模评估。
J Mol Model. 2012 May;18(5):1735-53. doi: 10.1007/s00894-011-1179-0. Epub 2011 Aug 12.
2
Cluster-based molecular docking study for in silico identification of novel 6-fluoroquinolones as potential inhibitors against Mycobacterium tuberculosis.基于聚类的分子对接研究,以在计算机中鉴定新型 6-氟喹诺酮类化合物作为潜在的结核分枝杆菌抑制剂。
J Comput Chem. 2013 Apr 5;34(9):790-801. doi: 10.1002/jcc.23205. Epub 2012 Dec 19.
3
Structure-Based Design and in Silico Screening of Virtual Combinatorial Library of Benzamides Inhibiting 2-trans Enoyl-Acyl Carrier Protein Reductase of with Favorable Predicted Pharmacokinetic Profiles.基于结构的设计和虚拟组合文库的计算机筛选苯甲酰胺抑制 2-反式烯酰基辅酶 A 还原酶与有利的预测药代动力学特征。
Int J Mol Sci. 2019 Sep 24;20(19):4730. doi: 10.3390/ijms20194730.
4
Anti-tubercular drug designing by structure based screening of combinatorial libraries.基于组合文库的结构筛选进行抗结核药物设计。
J Mol Model. 2011 Jul;17(7):1607-20. doi: 10.1007/s00894-010-0861-y. Epub 2010 Oct 16.
5
Combinatorial design and virtual screening of potent anti-tubercular fluoroquinolone and isothiazoloquinolone compounds utilizing QSAR and pharmacophore modelling.利用定量构效关系和药效团模型设计和虚拟筛选强效抗结核氟喹诺酮和异噻唑啉酮类化合物。
SAR QSAR Environ Res. 2018 Feb;29(2):151-170. doi: 10.1080/1062936X.2017.1419375.
6
In silico assessment of adverse effects of a large set of 6-fluoroquinolones obtained from a study of tuberculosis chemotherapy.通过一项结核病化疗研究获得的大量6-氟喹诺酮类药物不良反应的计算机模拟评估。
Curr Drug Saf. 2012 Sep;7(4):313-20. doi: 10.2174/1574886311207040313.
7
Chemometrical Exploration of Combinatorially Generated Drug-like Space of 6-fluoroquinolone Analogs: A QSAR Study.
Acta Chim Slov. 2010 Sep;57(3):529-40.
8
Virtual Combinatorial Chemistry and Pharmacological Screening: A Short Guide to Drug Design.虚拟组合化学与药理学筛选:药物设计简明指南。
Int J Mol Sci. 2022 Jan 30;23(3):1620. doi: 10.3390/ijms23031620.
9
Combinatorial Design of Molecule using Activity-Linked Substructural Topological Information as Applied to Antitubercular Compounds.利用活性关联亚结构拓扑信息进行分子组合设计在抗结核化合物中的应用
Curr Comput Aided Drug Des. 2019;15(1):67-81. doi: 10.2174/1573409914666180509152711.
10
Integrating virtual screening and combinatorial chemistry for accelerated drug discovery.整合虚拟筛选与组合化学以加速药物发现。
Comb Chem High Throughput Screen. 2011 Jul;14(6):475-87. doi: 10.2174/138620711795767866.

引用本文的文献

1
Pharmacophore-Based Virtual Screening and Molecular Dynamics Simulation for Identification of a Novel DNA Gyrase B Inhibitor with Benzoxazine Acetamide Scaffold.基于药效团的虚拟筛选和分子动力学模拟以鉴定一种具有苯并恶嗪乙酰胺骨架的新型DNA回旋酶B抑制剂
ACS Omega. 2021 Dec 22;7(1):1150-1164. doi: 10.1021/acsomega.1c05732. eCollection 2022 Jan 11.

本文引用的文献

1
Chemometrical Exploration of Combinatorially Generated Drug-like Space of 6-fluoroquinolone Analogs: A QSAR Study.
Acta Chim Slov. 2010 Sep;57(3):529-40.
2
Application of QSAR and shape pharmacophore modeling approaches for targeted chemical library design.定量构效关系(QSAR)和形状药效团建模方法在靶向化学文库设计中的应用。
Methods Mol Biol. 2011;685:111-33. doi: 10.1007/978-1-60761-931-4_6.
3
Structural basis of gate-DNA breakage and resealing by type II topoisomerases.Ⅱ型拓扑异构酶介导的门控 DNA 断裂和重连的结构基础。
PLoS One. 2010 Jun 28;5(6):e11338. doi: 10.1371/journal.pone.0011338.
4
Quantitative structure-activity relationship study of antitubercular fluoroquinolones.抗结核氟喹诺酮类化合物的定量构效关系研究。
Mol Divers. 2011 May;15(2):417-26. doi: 10.1007/s11030-010-9238-5. Epub 2010 Mar 14.
5
Crystal structure of the DNA gyrase GyrA N-terminal domain from Mycobacterium tuberculosis.结核分枝杆菌DNA促旋酶GyrA N端结构域的晶体结构
Proteins. 2010 Feb 1;78(2):492-5. doi: 10.1002/prot.22600.
6
Crystal structure of DNA gyrase B' domain sheds lights on the mechanism for T-segment navigation.DNA 促旋酶 B' 结构域的晶体结构揭示了 T 段导航机制。
Nucleic Acids Res. 2009 Sep;37(17):5908-16. doi: 10.1093/nar/gkp586. Epub 2009 Jul 13.
7
Interaction of nalidixic acid and ciprofloxacin with wild type and mutated quinolone-resistance-determining region of DNA gyrase A.萘啶酸和环丙沙星与野生型及突变型DNA促旋酶A喹诺酮耐药决定区的相互作用
Indian J Biochem Biophys. 2009 Apr;46(2):147-53.
8
Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases.对IIA型拓扑异构酶喹诺酮-DNA切割复合物的结构洞察。
Nat Struct Mol Biol. 2009 Jun;16(6):667-9. doi: 10.1038/nsmb.1604. Epub 2009 May 17.
9
Discovery of novel benzene 1,3-dicarboxylic acid inhibitors of bacterial MurD and MurE ligases by structure-based virtual screening approach.通过基于结构的虚拟筛选方法发现新型苯-1,3-二甲酸对细菌MurD和MurE连接酶的抑制剂
Bioorg Med Chem Lett. 2009 May 15;19(10):2668-73. doi: 10.1016/j.bmcl.2009.03.141. Epub 2009 Apr 1.
10
Mechanism of binding of fluoroquinolones to the quinolone resistance-determining region of DNA gyrase: towards an understanding of the molecular basis of quinolone resistance.氟喹诺酮类药物与DNA旋转酶喹诺酮耐药决定区的结合机制:旨在理解喹诺酮耐药的分子基础
Chembiochem. 2008 Sep 1;9(13):2081-6. doi: 10.1002/cbic.200800041.