Laboratorio de Química Teórica Computacional (QTC), Facultad de Química, Pontificia Universidad Católica de Chile, Santiago, Chile.
J Chem Phys. 2011 Aug 14;135(6):064505. doi: 10.1063/1.3624388.
The mean reaction force is introduced as the negative derivative of the free energy along a predefined reaction path. In analogy to the reaction force, this descriptor allows detailed characterization of different processes of the reaction mechanism and the assignment of electronic and structural free energy contributions to activation barriers. Due to its free energy dependence, the mean reaction force represents a new tool to study the influence of the environment on the reaction mechanism. Moreover, it enables the separation of catalytic effects in structural and electronic components responsible for the free energy barrier reduction of a reaction. To validate the method, the intramolecular proton transfer in tryptophan was studied in the gas phase, in aqueous solution and at the vacuum-water interface employing molecular dynamics simulation in combination with ab initio calculations and the quantum molecular/molecular mechanics (QM/MM) methodology. The obtained results were compared to static vacuum and continuum calculations. The mean reaction force distinguishes structural rearrangements as the dominant free energy component to reach the transition state from the neutral form, whereas electronic reorganization predominates the activation of the zwitterion in aqueous solution. In addition, it identifies the origin of the reduction of the activation barrier for desolvated functional groups at the water-vacuum interface as the absence of hydrogen bonds which stabilize charge delocalized species.
平均反力被引入为沿着预定义反应路径的自由能的负导数。与反力类似,该描述符允许对反应机制的不同过程进行详细描述,并将电子和结构自由能贡献分配给激活能垒。由于其自由能依赖性,平均反力代表了一种研究环境对反应机制影响的新工具。此外,它能够分离结构和电子组件中的催化效应,这些效应负责降低反应的自由能垒。为了验证该方法,在气相、水溶液中和真空-水界面中,采用分子动力学模拟结合从头算计算和量子分子/分子力学(QM/MM)方法,研究了色氨酸中的分子内质子转移。将获得的结果与静态真空和连续体计算进行了比较。平均反力区分了结构重排,将其作为从中性形式到达过渡态的主要自由能分量,而电子重组则在水溶液中主导两性离子的激活。此外,它确定了在真空-水界面上,去溶剂化官能团的激活能垒降低的原因是缺乏稳定电荷离域物种的氢键。