Department of Life and Nanopharmaceutical Sciences and Department of Biology, Kyung Hee University, Seoul 130-701, Republic of Korea.
Biotechnology Research Division, National Fisheries Research and Development Institute, Gijang, Busan 619-705, Republic of Korea.
Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1552-1557. doi: 10.1099/ijs.0.034645-0. Epub 2011 Aug 19.
Two strains, designated TW92(T) and TW93, were isolated from marine sediment collected from the south coast of Korea. Cells of both strains were Gram-staining-negative, coccus-shaped, aerobic, motile and catalase- and oxidase-positive. Strain TW92(T) grew optimally in the presence of 2 % (w/v) NaCl (range 1-5%) while strain TW93 grew optimally in the presence of 1% (w/v) NaCl (range 0-12%), and both strains had an optimal growth temperature of 30 °C (range 4-37 °C). Strains TW92(T) and TW93 had the same optimum pH (pH 7), but differed in their ability to grow at pH 10. Phylogenetic analysis based on 16S rRNA gene sequence similarity showed that strains TW92(T) and TW93 were most closely related to Oceanisphaera donghaensis BL1(T), with 98.8% and 98.7% similarity, respectively. Pairwise similarity between the 16S rRNA gene sequences of strains TW92(T) and TW93 was 99.9%. The major fatty acids of both strains were summed features 3 (comprising C(16:1)ω7c/iso-C(15) 2-OH), C(16:0) and C(18:1)ω7c. Both strains possessed the ubiquinone Q-8 as the predominant respiratory quinone and phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol as the polar lipids. The genomic DNA G+C contents of strains TW92(T) and TW93 were 58.5 and 59.6 mol%, respectively. Genomic relatedness values based on DNA-DNA hybridization of strains TW92(T) and TW93 with related species were below 47% and 31%, respectively. DNA-DNA hybridization values between strains TW92(T) and TW93 were above 85%. On the basis of a taxonomic study using polyphasic analysis, it is proposed that the two isolates represent a novel species, Oceanisphaera sediminis sp. nov., with strain TW92(T) (=KACC 15117(T)=JCM 17329(T)) as the type strain and strain TW93 (=KACC 15118=JCM 17330) as an additional strain.
两株菌 TW92(T)和 TW93 从韩国南部海岸的海洋沉积物中分离出来。两株菌的细胞革兰氏染色阴性,呈球菌状,为需氧、运动和接触酶及氧化酶阳性。TW92(T)株在 2%(w/v)NaCl (范围 1-5%)中生长最佳,而 TW93 株在 1%(w/v)NaCl (范围 0-12%)中生长最佳,两株菌的最佳生长温度均为 30°C(范围 4-37°C)。TW92(T)株和 TW93 株的最适 pH(pH 7)相同,但在 pH 10 下的生长能力不同。基于 16S rRNA 基因序列相似性的系统发育分析表明,TW92(T)株和 TW93 株与东海海洋杆菌 BL1(T)最为密切相关,相似度分别为 98.8%和 98.7%。TW92(T)株和 TW93 株的 16S rRNA 基因序列之间的成对相似度为 99.9%。两株菌的主要脂肪酸均为组成特征 3(包含 C(16:1)ω7c/iso-C(15) 2-OH)、C(16:0)和 C(18:1)ω7c。两株菌均含有泛醌 Q-8 作为主要的呼吸醌和磷脂酰乙醇胺、磷脂酰甘油和双磷脂酰甘油作为极性脂。TW92(T)株和 TW93 株的基因组 DNA G+C 含量分别为 58.5%和 59.6mol%。TW92(T)株和 TW93 株与相关种属的 DNA-DNA 杂交的基因组相关性值分别低于 47%和 31%。TW92(T)株和 TW93 株之间的 DNA-DNA 杂交值高于 85%。基于多相分析的分类学研究,建议这两个分离株代表一个新的物种,即海洋杆菌 sediminis sp. nov.,TW92(T)株(=KACC 15117(T)=JCM 17329(T))为模式株,TW93 株(=KACC 15118=JCM 17330)为附加株。