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潮间带活拟泥杆菌新种,一种从潮滩沉积物中分离出的γ-变形菌。

Simiduia aestuariiviva sp. nov., a gammaproteobacterium isolated from a tidal flat sediment.

作者信息

Park Sooyeon, Kim Soo-In, Kang Chul-Hyung, Park Ji-Min, Yoon Jung-Hoon

机构信息

Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, South Korea.

出版信息

Antonie Van Leeuwenhoek. 2014 Nov;106(5):927-34. doi: 10.1007/s10482-014-0262-9. Epub 2014 Aug 23.

Abstract

A Gram-stain negative, aerobic, motile and rod-shaped bacterial strain, designated J-MY2(T), was isolated from a tidal flat sediment of the South Sea, South Korea. Strain J-MY2(T) was found to grow optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain J-MY2(T) forms a cluster with the type strains of Simiduia species. Strain J-MY2(T) exhibited 16S rRNA gene sequence similarity values of 97.62-98.77 % to the type strains of four Simiduia species and of <92.95 % sequence similarity to the type strains of the other recognized species. Strain J-MY2(T) was found to contain Q-8 as the predominant ubiquinone and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C16:0, C18:1 ω7c and C17:1 ω8c as the major fatty acids. The major polar lipids of strain J-MY2(T) were identified as phosphatidylethanolamine, phosphatidylglycerol, three unidentified glycolipids and one unidentified lipid. The DNA G+C content of strain J-MY2(T) was determined to be 54.8 mol% and its mean DNA-DNA relatedness values with the type strains of the four Simiduia species were in the range 21-34 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain J-MY2(T) is separated from other Simiduia species. On the basis of the data presented, strain J-MY2(T) is considered to represent a novel species of the genus Simiduia, for which the name Simiduia aestuariiviva sp. nov. is proposed. The type strain is J-MY2(T) ( = KCTC 42073(T) = CECT 8571(T)).

摘要

从韩国南海的潮滩沉积物中分离出一株革兰氏染色阴性、需氧、具运动性的杆状细菌菌株,命名为J-MY2(T)。发现菌株J-MY2(T)在30°C、pH 7.0 - 8.0和2.0%(w/v)NaCl条件下生长最佳。基于16S rRNA基因序列构建的系统发育树显示,菌株J-MY2(T)与西米杜氏菌属(Simiduia)模式菌株形成一个簇。菌株J-MY2(T)与4种西米杜氏菌属模式菌株的16S rRNA基因序列相似性值为97.62 - 98.77%,与其他已确认种的模式菌株序列相似性小于92.95%。发现菌株J-MY2(T)以Q-8作为主要泛醌,主要脂肪酸为特征性总和3(C16:1 ω7c和/或C16:1 ω6c)、C16:0、C18:1 ω7c和C17:1 ω8c。菌株J-MY2(T)的主要极性脂被鉴定为磷脂酰乙醇胺、磷脂酰甘油、三种未鉴定的糖脂和一种未鉴定的脂类。菌株J-MY2(T)的DNA G+C含量测定为54.8 mol%,其与4种西米杜氏菌属模式菌株的平均DNA-DNA相关性值在21 - 34%范围内。不同的表型特征,以及系统发育和遗传独特性,表明菌株J-MY2(T)与其他西米杜氏菌属物种不同。根据所提供的数据,菌株J-MY2(T)被认为代表西米杜氏菌属的一个新物种,为此提出新名称河口西米杜氏菌(Simiduia aestuariiviva sp. nov.)。模式菌株为J-MY2(T)(=KCTC 42073(T)=CECT 8571(T))。

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