Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess Street, Manchester M1 7DN, Great Britain.
J Phys Chem B. 2011 Oct 6;115(39):11389-98. doi: 10.1021/jp2053234. Epub 2011 Sep 9.
Imidazole is a small but important molecule occurring as a structure fragment in systems from amino acids, over ionic liquids, to synthetic polymers. Here we focus on the structure and dynamics of imidazole in water at ambient conditions, using both radial and spatial distribution functions. Molecular dynamics simulations were carried out for various imidazole concentrations, using a traditional point-charge potential and a high-rank multipolar potential. The difference in the description of the electrostatics leads to sizable quantitative differences (e.g., the diffusion coefficient) but also qualitative differences in the local structure. In contrast to a point-charge potential, the multipolar potential favors hydrogen-bonded chainlike imidazole dimers over stacked dimers.
咪唑是一种小而重要的分子,存在于从氨基酸到离子液体再到合成聚合物等系统的结构片段中。在这里,我们使用径向和空间分布函数来关注环境条件下水中咪唑的结构和动力学。使用传统的点电荷势和高阶多极势对各种咪唑浓度进行了分子动力学模拟。静电描述的差异导致了相当大的定量差异(例如,扩散系数),但也导致了局部结构的定性差异。与点电荷势相反,多极势有利于氢键连接的链状咪唑二聚体而不是堆叠的二聚体。