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完整的序列和组织的鞘氨醇单胞菌 chungbukense DJ77 pSY2 质粒。

Complete sequence and organization of the Sphingobium chungbukense DJ77 pSY2 plasmid.

机构信息

Department of Microbiology, Chungbuk National University, Chungbuk 361-763, Republic of Korea.

出版信息

J Microbiol. 2011 Aug;49(4):684-8. doi: 10.1007/s12275-011-1262-3. Epub 2011 Sep 2.

Abstract

Sphingobium chungbukense DJ77 is capable of metabolizing priority chemicals of human health concern such as polycyclic aromatic hydrocarbons (PAHs), extracellular polysaccharide (EPS), and antibiotics. Here, we report the complete DNA and genetic organization of the plasmid pSY2 from strain DJ77. A DNA sequence analysis revealed that pSY2 comprises 18,779 bp encoding 22 open reading frames (ORFs) with 59.5% G+C content. The ORFs on pSY2 were classified into DNA replication, conjugative function, transposition, plasmid stability/partition, and other functional groups (transport, fatty acid biosynthesis, stress, and growth rate regulation). Three ORFs on pSY2 were hypothetical proteins.

摘要

钟北鞘氨醇单胞菌 DJ77 能够代谢对人类健康有优先关注的化学物质,如多环芳烃 (PAHs)、细胞外多糖 (EPS) 和抗生素。在这里,我们报告了来自 DJ77 菌株的质粒 pSY2 的完整 DNA 和遗传组织。DNA 序列分析表明,pSY2 包含 18779bp,编码 22 个开放阅读框 (ORFs),GC 含量为 59.5%。pSY2 上的 ORFs 分为 DNA 复制、共轭功能、转位、质粒稳定性/分割和其他功能组 (运输、脂肪酸生物合成、应激和生长速度调节)。pSY2 上的三个 ORFs 是假设蛋白。

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