产甲烷杆菌属新种,分离自淡水分层湖深底层沉积物。

Methanobacterium lacus sp. nov., isolated from the profundal sediment of a freshwater meromictic lake.

机构信息

UMR CNRS 6023, Université Blaise Pascal, BP 10448, F-63000 Clermont-Ferrand, France.

Clermont Université, Université Blaise Pascal, Laboratoire Microorganismes: Génome et Environnement, BP 10448, F-63000 Clermont-Ferrand, France.

出版信息

Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1625-1629. doi: 10.1099/ijs.0.034538-0. Epub 2011 Sep 2.

Abstract

An autotrophic, hydrogenotrophic methanogen, designated strain 17A1(T), was isolated from the profundal sediment of the meromictic Lake Pavin, France. The cells of the novel strain, which were non-motile, Gram-staining-negative rods that measured 2-15 µm in length and 0.2-0.4 µm in width, grew as filaments. Strain 17A1(T) grew in a mineral medium and its growth was stimulated by the addition of yeast extract, vitamins, acetate or rumen fluid. Penicillin, vancomycin and kanamycin reduced growth but did not completely inhibit it. Growth occurred at 14-41 °C (optimum 30 °C), at pH 5.0-8.5 (optimum pH 6.5) and with 0-0.4 M NaCl (optimum 0.1 M). The novel strain utilized H(2)/CO(2) and methanol/H(2) as substrates but not formate, acetate, methylamine/H(2), isobutanol or 2-propanol. Its genomic DNA G+C content was 37.0 mol%. In phylogenetic analyses based on 16S rRNA gene sequences, strain 17A1(T) appeared to be a member of the genus Methanobacterium, with Methanobacterium beijingense 8-2(T) (96.3% sequence similarity) identified as the most closely related established species. Based on phenotypic and phylogenetic data, strain 17A1(T) represents a novel species of methanogen within the genus Methanobacterium, for which the name Methanobacterium lacus sp. nov. is proposed. The type strain is 17A1(T) (=DSM 24406(T)=JCM 17760(T)).

摘要

一株自养型、氢营养型产甲烷菌,被命名为 17A1(T) 株,从法国分层湖 Pavin 的深湖底泥中分离得到。该新菌株的细胞为非运动性、革兰氏阴性的杆状,长 2-15μm,宽 0.2-0.4μm,呈丝状生长。17A1(T) 株在无机盐培养基中生长,其生长受到酵母提取物、维生素、乙酸盐或瘤胃液的刺激。青霉素、万古霉素和卡那霉素抑制其生长但不完全抑制。生长温度为 14-41°C(最适温度为 30°C),pH 值为 5.0-8.5(最适 pH 值为 6.5),NaCl 浓度为 0-0.4 M(最适浓度为 0.1 M)。该新菌株利用 H(2)/CO(2) 和甲醇/H(2) 作为底物,但不利用甲酸盐、乙酸盐、甲胺/H(2)、异丁醇或 2-丙醇。其基因组 DNA G+C 含量为 37.0 mol%。基于 16S rRNA 基因序列的系统发育分析,17A1(T) 株被认为是甲烷杆菌属的一个成员,与 Methanobacterium beijingense 8-2(T)(96.3%序列相似性)最为密切相关。基于表型和系统发育数据,17A1(T) 株代表甲烷杆菌属中的一种新型产甲烷菌,提议将其命名为 Methanobacterium lacus sp. nov.。模式菌株为 17A1(T)(=DSM 24406(T)=JCM 17760(T))。

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