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Benchmark Databases for Nonbonded Interactions and Their Use To Test Density Functional Theory.非键相互作用基准数据库及其用于测试密度泛函理论。
J Chem Theory Comput. 2005 May;1(3):415-32. doi: 10.1021/ct049851d.
2
Determination of Electrostatic Parameters for a Polarizable Force Field Based on the Classical Drude Oscillator.基于经典 Drude 振荡器的极化力场静电参数的确定。
J Chem Theory Comput. 2005 Jan;1(1):153-68. doi: 10.1021/ct049930p.
3
Special Issue on Polarization.极化专题
J Chem Theory Comput. 2007 Nov;3(6):1877. doi: 10.1021/ct700252g.
4
Polarizable Force Field for Protein with Charge Response Kernel.具有电荷响应核的蛋白质极化力场
J Chem Theory Comput. 2009 Oct 13;5(10):2809-21. doi: 10.1021/ct900295u. Epub 2009 Sep 24.
5
Atomic Level Anisotropy in the Electrostatic Modeling of Lone Pairs for a Polarizable Force Field Based on the Classical Drude Oscillator.基于经典德鲁德振荡器的可极化力场中孤对电子静电建模的原子水平各向异性
J Chem Theory Comput. 2006 Nov;2(6):1587-97. doi: 10.1021/ct600180x.
6
Including Charge Penetration Effects in Molecular Modeling.在分子建模中纳入电荷穿透效应。
J Chem Theory Comput. 2010 Nov 9;6(11):3330-42. doi: 10.1021/ct1003862.
7
Using multipole point charge distributions to provide the electrostatic potential in the variational explicit polarization (X-Pol) potential.使用多极点电荷分布在变分显式极化(X-Pol)势中提供静电势。
Theor Chem Acc. 2011 May 1;129(1):3-13. doi: 10.1007/s00214-011-0889-9. Epub 2011 Jan 26.
8
Dipole preserving and polarization consistent charges.偶极子保持和极化一致电荷。
J Comput Chem. 2011 Jul 30;32(10):2127-39. doi: 10.1002/jcc.21795. Epub 2011 May 3.
9
On the Interfragment Exchange in the X-Pol Method.关于X-Pol方法中的片段间交换
J Chem Theory Comput. 2010;6(8):2469-2476. doi: 10.1021/ct100268p.
10
Current status of the AMOEBA polarizable force field.AMOEBA 极化力场的现状。
J Phys Chem B. 2010 Mar 4;114(8):2549-64. doi: 10.1021/jp910674d.

通过巨正则密度泛函理论将电荷转移纳入显式极化碎片方法。

Incorporation of charge transfer into the explicit polarization fragment method by grand canonical density functional theory.

机构信息

Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA.

出版信息

J Chem Phys. 2011 Aug 28;135(8):084107. doi: 10.1063/1.3624890.

DOI:10.1063/1.3624890
PMID:21895159
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3182081/
Abstract

Molecular fragmentation algorithms provide a powerful approach to extending electronic structure methods to very large systems. Here we present a method for including charge transfer between molecular fragments in the explicit polarization (X-Pol) fragment method for calculating potential energy surfaces. In the conventional X-Pol method, the total charge of each fragment is preserved, and charge transfer between fragments is not allowed. The description of charge transfer is made possible by treating each fragment as an open system with respect to the number of electrons. To achieve this, we applied Mermin's finite temperature method to the X-Pol wave function. In the application of this method to X-Pol, the fragments are open systems that partially equilibrate their number of electrons through a quasithermodynamics electron reservoir. The number of electrons in a given fragment can take a fractional value, and the electrons of each fragment obey the Fermi-Dirac distribution. The equilibrium state for the electrons is determined by electronegativity equalization with conservation of the total number of electrons. The amount of charge transfer is controlled by re-interpreting the temperature parameter in the Fermi-Dirac distribution function as a coupling strength parameter. We determined this coupling parameter so as to reproduce the charge transfer energy obtained by block localized energy decomposition analysis. We apply the new method to ten systems, and we show that it can yield reasonable approximations to potential energy profiles, to charge transfer stabilization energies, and to the direction and amount of charge transferred.

摘要

分子碎片化算法为将电子结构方法扩展到非常大的系统提供了一种强大的方法。在这里,我们提出了一种在用于计算势能面的显式极化(X-Pol)片段方法中包含分子片段之间电荷转移的方法。在传统的 X-Pol 方法中,每个片段的总电荷保持不变,并且不允许片段之间发生电荷转移。通过将每个片段视为相对于电子数的开放系统,可以实现对电荷转移的描述。为了实现这一点,我们将 Mermin 的有限温度方法应用于 X-Pol 波函数。在将该方法应用于 X-Pol 时,片段是开放系统,它们通过准热力学电子库部分平衡其电子数。给定片段中的电子数可以取分数值,并且每个片段的电子服从费米-狄拉克分布。电子的平衡状态由电负性均衡与总电子数守恒决定。电荷转移的量通过将费米-狄拉克分布函数中的温度参数重新解释为耦合强度参数来控制。我们确定了这个耦合参数,以便再现通过块局部能量分解分析获得的电荷转移能量。我们将新方法应用于十个系统,结果表明它可以对势能曲线、电荷转移稳定能以及电荷转移的方向和量进行合理的近似。