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种子休眠与萌发的蛋白质组学及翻译后蛋白质组学

Proteomics and posttranslational proteomics of seed dormancy and germination.

作者信息

Rajjou Loïc, Belghazi Maya, Catusse Julie, Ogé Laurent, Arc Erwann, Godin Béatrice, Chibani Kamel, Ali-Rachidi Sonia, Collet Boris, Grappin Philippe, Jullien Marc, Gallardo Karine, Job Claudette, Job Dominique

机构信息

AgroParisTech, Unité de Formation et de Recherche de Physiologie Végétale, Paris, France.

出版信息

Methods Mol Biol. 2011;773:215-36. doi: 10.1007/978-1-61779-231-1_14.

DOI:10.1007/978-1-61779-231-1_14
PMID:21898259
Abstract

The seed is the dispersal unit of plants and must survive the vagaries of the environment. It is the object of intense genetic and genomic studies because processes related to seed quality affect crop yield and the seed itself provides food for humans and animals. Presently, the general aim of postgenomics analyses is to understand the complex biochemical and molecular processes underlying seed quality, longevity, dormancy, and vigor. Due to advances in functional genomics, the recent past years have seen a tremendous progress in our understanding of several aspects of seed development and germination. Here, we describe the proteomics protocols (from protein extraction to mass spectrometry) that can be used to investigate several aspects of seed physiology, including germination and its hormonal regulation, dormancy release, and seed longevity. These techniques can be applied to the study of both model plants (such as Arabidopsis) and crops.

摘要

种子是植物的传播单位,必须经受住环境的变幻莫测。它是深入的遗传和基因组研究的对象,因为与种子质量相关的过程会影响作物产量,而且种子本身为人类和动物提供食物。目前,后基因组学分析的总体目标是了解种子质量、寿命、休眠和活力背后复杂的生化和分子过程。由于功能基因组学的进展,在过去几年里,我们对种子发育和萌发的几个方面的理解取得了巨大进展。在这里,我们描述了蛋白质组学方案(从蛋白质提取到质谱分析),这些方案可用于研究种子生理学的几个方面,包括萌发及其激素调节、休眠解除和种子寿命。这些技术可应用于模式植物(如拟南芥)和作物的研究。

相似文献

1
Proteomics and posttranslational proteomics of seed dormancy and germination.种子休眠与萌发的蛋白质组学及翻译后蛋白质组学
Methods Mol Biol. 2011;773:215-36. doi: 10.1007/978-1-61779-231-1_14.
2
Production of seed samples for the effective molecular analysis of dormancy cycling in Arabidopsis.用于拟南芥休眠循环有效分子分析的种子样本制备。
Methods Mol Biol. 2011;773:65-79. doi: 10.1007/978-1-61779-231-1_5.
3
Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy.三种参与脱落酸信号传导的拟南芥SnRK2蛋白激酶,即SRK2D/SnRK2.2、SRK2E/SnRK2.6/OST1和SRK2I/SnRK2.3,对于种子发育和休眠的控制至关重要。
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Isolation of microRNAs that regulate seed dormancy and germination.调控种子休眠与萌发的微小核糖核酸的分离
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Comprehensive hormone profiling in developing Arabidopsis seeds: examination of the site of ABA biosynthesis, ABA transport and hormone interactions.全面的激素谱分析在拟南芥种子发育过程中的应用:对 ABA 生物合成、ABA 运输和激素相互作用的位点的研究。
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Molecular mechanisms of seed dormancy.种子休眠的分子机制。
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Profiling of hormones and related metabolites in seed dormancy and germination studies.种子休眠与萌发研究中激素及相关代谢物的分析
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Chromatin dynamics during seed dormancy.种子休眠期间的染色质动态变化。
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Arabidopsis seed secrets unravelled after a decade of genetic and omics-driven research.经过十年的遗传和组学驱动的研究,拟南芥种子的秘密被揭开。
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Identification of seed dormancy mutants by activation tagging.
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引用本文的文献

1
Combined Proteomic and Metabolomic Profiling of the Mutant Reveals Pleiotropic Functions of the Retromer in Seed Development.突变体的蛋白质组学和代谢组学联合分析揭示了返体在种子发育中的多功能性。
Int J Mol Sci. 2019 Jan 16;20(2):362. doi: 10.3390/ijms20020362.
2
Xyloglucan Metabolism Differentially Impacts the Cell Wall Characteristics of the Endosperm and Embryo during Arabidopsis Seed Germination.木葡聚糖代谢对拟南芥种子萌发过程中胚乳和胚的细胞壁特性有不同影响。
Plant Physiol. 2016 Mar;170(3):1367-80. doi: 10.1104/pp.15.01312. Epub 2016 Jan 29.
3
The Amborella vacuolar processing enzyme family.
无油樟液泡加工酶家族。
Front Plant Sci. 2015 Aug 21;6:618. doi: 10.3389/fpls.2015.00618. eCollection 2015.
4
A role for seed storage proteins in Arabidopsis seed longevity.种子储存蛋白在拟南芥种子寿命中的作用。
J Exp Bot. 2015 Oct;66(20):6399-413. doi: 10.1093/jxb/erv348. Epub 2015 Jul 16.
5
Advances in plant proteomics toward improvement of crop productivity and stress resistancex.植物蛋白质组学在提高作物生产力和抗逆性方面的进展x。
Front Plant Sci. 2015 Apr 14;6:209. doi: 10.3389/fpls.2015.00209. eCollection 2015.
6
Proteomic analysis of lettuce seed germination and thermoinhibition by sampling of individual seeds at germination and removal of storage proteins by polyethylene glycol fractionation.通过在发芽时对单个种子进行采样以及采用聚乙二醇分级分离法去除贮藏蛋白,对生菜种子萌发和热抑制进行蛋白质组学分析。
Plant Physiol. 2015 Apr;167(4):1332-50. doi: 10.1104/pp.15.00045. Epub 2015 Mar 3.
7
Dynamic proteomics emphasizes the importance of selective mRNA translation and protein turnover during Arabidopsis seed germination.动态蛋白质组学强调了在拟南芥种子萌发过程中选择性 mRNA 翻译和蛋白质周转的重要性。
Mol Cell Proteomics. 2014 Jan;13(1):252-68. doi: 10.1074/mcp.M113.032227. Epub 2013 Nov 6.
8
The seed proteome web portal.种子蛋白质组学网络门户。
Front Plant Sci. 2012 Jun 11;3:98. doi: 10.3389/fpls.2012.00098. eCollection 2012.